Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 8e-14 >seq6 Length=179136 Score = 95.1 bits (104), Expect = 8e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| ||||| || | ||||| ||| || || || ||| || || | || || Sbjct 30323 ACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAAAGGGT 30264 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | || ||||| ||||| ||||| || |||||||| ||||| || || || || || Sbjct 30263 TCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGTTGGTCTGGGGGGATGCC 30204 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||| |||||||| ||||| ||||||||||| | | | ||||| Sbjct 30203 TTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCGGAGGATTCGACCTCAAG 30144 Query 480731 GGTAATAGTTTTACCGGTGA 480750 || || || || ||||||| Sbjct 30143 AGTGATGGTCTTGCCGGTGA 30124 Score = 95.1 bits (104), Expect = 8e-14 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || ||||||||||| || || || |||||||| || || ||||| ||||| || |||||| Sbjct 30540 TCCTCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTG 30481 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 || |||||||| || ||| || || ||||||| | | || |||||||| || Sbjct 30480 TCCTGAATCTTCGACTTCACATTGTCGATGGTATCAGAAGACTCAA-CCTCAAGGGTGAT 30422 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGA 480762 || || |||||||| ||||| |||| Sbjct 30421 GGTCTTGCCGGTGAGGGTCTTGACGA 30396 Score = 91.5 bits (100), Expect = 1e-12 Identities = 154/224 (69%), Gaps = 12/224 (5%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || || || || || ||||| || ||| || || || |||||||| | || || Sbjct 30834 CGGAGGCGAAGGACGAGATGCAGGGTAGACTCCTTCTGAATGTTATAATCCGACAGGGTG 30775 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||| || || |||||||||||||| || | ||| || || || ||||| || || Sbjct 30774 CGACCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGGATGCCC 30715 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT------ 480725 ||||||||||| ||||| |||||| ||||| |||| ||||| | Sbjct 30714 TCCTTGTCTTGGATCTTCGACTTGACATTGTCAAT------GGTGTCTGAAGATTCGACC 30661 Query 480726 TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || || || || |||||||| ||||| ||||| Sbjct 30660 TCGAGCGTAATCGTCTTGCCTGTCAGAGTCTTGACGAAGATTTG 30617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268165430752508