Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq6 95.1 8e-14
>seq6
Length=179136
Score = 95.1 bits (104), Expect = 8e-14
Identities = 141/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||| ||||| || | ||||| ||| || || || ||| || || | || ||
Sbjct 30323 ACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAAAGGGT 30264
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| | || ||||| ||||| ||||| || |||||||| ||||| || || || || ||
Sbjct 30263 TCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGTTGGTCTGGGGGGATGCC 30204
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
||||||||| |||||||| ||||| ||||||||||| | | | |||||
Sbjct 30203 TTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCGGAGGATTCGACCTCAAG 30144
Query 480731 GGTAATAGTTTTACCGGTGA 480750
|| || || || |||||||
Sbjct 30143 AGTGATGGTCTTGCCGGTGA 30124
Score = 95.1 bits (104), Expect = 8e-14
Identities = 110/146 (75%), Gaps = 2/146 (1%)
Strand=Plus/Minus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
|| ||||||||||| || || || |||||||| || || ||||| ||||| || ||||||
Sbjct 30540 TCCTCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTG 30481
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736
|| |||||||| || ||| || || ||||||| | | || |||||||| ||
Sbjct 30480 TCCTGAATCTTCGACTTCACATTGTCGATGGTATCAGAAGACTCAA-CCTCAAGGGTGAT 30422
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGA 480762
|| || |||||||| ||||| ||||
Sbjct 30421 GGTCTTGCCGGTGAGGGTCTTGACGA 30396
Score = 91.5 bits (100), Expect = 1e-12
Identities = 154/224 (69%), Gaps = 12/224 (5%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
|| || || || || ||||| || ||| || || || |||||||| | || ||
Sbjct 30834 CGGAGGCGAAGGACGAGATGCAGGGTAGACTCCTTCTGAATGTTATAATCCGACAGGGTG 30775
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| ||| || || |||||||||||||| || | ||| || || || ||||| || ||
Sbjct 30774 CGACCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGGATGCCC 30715
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT------ 480725
||||||||||| ||||| |||||| ||||| |||| ||||| |
Sbjct 30714 TCCTTGTCTTGGATCTTCGACTTGACATTGTCAAT------GGTGTCTGAAGATTCGACC 30661
Query 480726 TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || ||||| || || || || |||||||| ||||| |||||
Sbjct 30660 TCGAGCGTAATCGTCTTGCCTGTCAGAGTCTTGACGAAGATTTG 30617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268165430752508
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |