Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq49 170 2e-37
seq179 102 1e-16
>seq49
Length=112291
Score = 170 bits (188), Expect = 2e-37
Identities = 612/938 (65%), Gaps = 33/938 (4%)
Strand=Plus/Minus
Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCT--TCAACGGCTCGATGGCATCCTC 75202
||||| || |||| ||||| |||| || | || || |||| |||||| |||| |
Sbjct 51420 TACTTCGGCTTCAAGACCCTGGAGA-GATCATACCTACTCAA--GCTCGACGGCAAGATT 51364
Query 75203 ATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATT 75262
|| | || ||| ||||| ||||||| || ||| |||||||| || || || ||
Sbjct 51363 GCCGAGAGACCGCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGACAACGTT 51304
Query 75263 GATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACAC 75320
|| ||| | ||||| ||| || ||||||| |||| | | ||| ||||| | |
Sbjct 51303 GAGCGCGTCATCGAGACCTACAACTTGATGTCCAGCAAGTTCT--TCACCCACGCCTCTC 51246
Query 75321 CAACCCTCTTCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCC 75379
| || |||||||| || ||||| || || | ||| |||| ||||||||| ||| |
Sbjct 51245 CCACACTCTTCAACGCCGGTACCCCTCAGTGC-CAGCTGTCTTCTTGCTTCCTCGTCGAC 51187
Query 75380 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 75439
| ||||| ||||| || | |||||||| | || || | | || || |||||
Sbjct 51186 ATGAAGGAAGACTCCATTGAGGGTATCTACGACACGCTCAAGACCTGCGCCATGATCTCC 51127
Query 75440 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 75499
||| ||| || || ||||| | || ||| | | |||| | || ||||
Sbjct 51126 AAGATGGCCGGTGGCATTGGTCTCAACGCCCACCGCATCCGTGCCACTGGCTCCTATATT 51067
Query 75500 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 75559
|| || || || || | || | || || |||||||| || || || |||
Sbjct 51066 GCCGGCACCAACGGCACCTCGAACGGAGTCATCCCCATGCTTCGTGTCTTCAATAACACG 51007
Query 75560 GCGCGCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTG 75613
|| ||||| || |||||| || ||||| || || |||| | ||| |
Sbjct 51006 GCTCGCTACGTCGATCAAGGTGGTAATAAGCGTCCT---GGTGCCTTCGCCATTTACCTT 50950
Query 75614 GAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAA 75673
|| || ||||| |||||| || | |||||| | || | || ||||| || | ||
Sbjct 50949 GAGCCCTGGCACGCCGATGTCTTTGAGTTCATGGATCTGCGCAAGAACCACGGCAAGGAG 50890
Query 75674 GAGGCTCGGTG-TAGAGATCTCTTTTCAT-CCCTGTGGATTCCAGACCTTTTCATGAAGC 75731
|||| || ||| | | || || ||| | | |||| ||||| || || || |||||||||
Sbjct 50889 GAGG-TCCGTGCTCGCGACCT-TTTCCTTGCCCTCTGGATCCCCGATCTATTCATGAAGA 50832
Query 75732 GGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCG 75791
| || ||| || | | | ||| | || | ||||| | || || ||||| | |
Sbjct 50831 GAGTCGAGAAGAACGCTGACTGGACCCTCATGTGTCCCAATGAGTGCCCCGGTCTGGCTG 50772
Query 75792 ACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC-- 75849
|| || |||||||| || ||| | ||| ||||| || |||||| | |
Sbjct 50771 ACTGCTACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGGGAGGGCAAGGGTC 50712
Query 75850 -CAATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAG 75907
||| ||| | | || | | || | ||||| | || |||||| | | ||||| |||
Sbjct 50711 GCAA---GACCAT-CAAGGCCCAGAAGCTTTGGTACGCAATTCTCGAGGCTCAGACTGAG 50656
Query 75908 ACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAAT 75967
||||| | || | ||||||||||||||||| ||| ||||| ||||| |||||
Sbjct 50655 ACTGGCAACCCTTTCATGCTTTACAAGGATGCCGCAAACCGCAAGAGCAACCAGAAGAAC 50596
Query 75968 TTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGAT 76027
| || || ||| ||||| || || ||||| || || | |||||| | |||
Sbjct 50595 CTCGGCACCATCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCCCCTGAT 50536
Query 76028 GAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCC 76065
||| ||||| ||||| ||||| || ||||||||||
Sbjct 50535 GAGGTCGCTGTCTGCAACTTGGCTTCTCTCGCCCTTCC 50498
>seq179
Length=397792
Score = 102 bits (112), Expect = 1e-16
Identities = 149/208 (72%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCG 65081
|||||||| | ||||| |||||||| | | || | ||| ||||||||| ||||
Sbjct 380765 AAGAAGGCCGACTGGGCCTTGAAATGGATCAGCGACGAGAGCTCA-TCCTTCGCCCAGCG 380823
Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141
|| |||| || || ||| ||||||||||||||| ||| | ||| | | ||||
Sbjct 380824 TCTGGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCGTTCGCCTCCATTTT 380883
Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201
||| | |||||||| ||||||||||| || || |||||| || || || || || ||
Sbjct 380884 CTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCG 380943
Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCC 65229
|| ||||| || ||| || ||||||
Sbjct 380944 CGACGAGGGCCTGCACACTGACTTTGCC 380971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596567206264480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |