Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq49 170 2e-37 seq179 102 1e-16 >seq49 Length=112291 Score = 170 bits (188), Expect = 2e-37 Identities = 612/938 (65%), Gaps = 33/938 (4%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCT--TCAACGGCTCGATGGCATCCTC 75202 ||||| || |||| ||||| |||| || | || || |||| |||||| |||| | Sbjct 51420 TACTTCGGCTTCAAGACCCTGGAGA-GATCATACCTACTCAA--GCTCGACGGCAAGATT 51364 Query 75203 ATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATT 75262 || | || ||| ||||| ||||||| || ||| |||||||| || || || || Sbjct 51363 GCCGAGAGACCGCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGACAACGTT 51304 Query 75263 GATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACAC 75320 || ||| | ||||| ||| || ||||||| |||| | | ||| ||||| | | Sbjct 51303 GAGCGCGTCATCGAGACCTACAACTTGATGTCCAGCAAGTTCT--TCACCCACGCCTCTC 51246 Query 75321 CAACCCTCTTCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCC 75379 | || |||||||| || ||||| || || | ||| |||| ||||||||| ||| | Sbjct 51245 CCACACTCTTCAACGCCGGTACCCCTCAGTGC-CAGCTGTCTTCTTGCTTCCTCGTCGAC 51187 Query 75380 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 75439 | ||||| ||||| || | |||||||| | || || | | || || ||||| Sbjct 51186 ATGAAGGAAGACTCCATTGAGGGTATCTACGACACGCTCAAGACCTGCGCCATGATCTCC 51127 Query 75440 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 75499 ||| ||| || || ||||| | || ||| | | |||| | || |||| Sbjct 51126 AAGATGGCCGGTGGCATTGGTCTCAACGCCCACCGCATCCGTGCCACTGGCTCCTATATT 51067 Query 75500 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 75559 || || || || || | || | || || |||||||| || || || ||| Sbjct 51066 GCCGGCACCAACGGCACCTCGAACGGAGTCATCCCCATGCTTCGTGTCTTCAATAACACG 51007 Query 75560 GCGCGCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTG 75613 || ||||| || |||||| || ||||| || || |||| | ||| | Sbjct 51006 GCTCGCTACGTCGATCAAGGTGGTAATAAGCGTCCT---GGTGCCTTCGCCATTTACCTT 50950 Query 75614 GAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAA 75673 || || ||||| |||||| || | |||||| | || | || ||||| || | || Sbjct 50949 GAGCCCTGGCACGCCGATGTCTTTGAGTTCATGGATCTGCGCAAGAACCACGGCAAGGAG 50890 Query 75674 GAGGCTCGGTG-TAGAGATCTCTTTTCAT-CCCTGTGGATTCCAGACCTTTTCATGAAGC 75731 |||| || ||| | | || || ||| | | |||| ||||| || || || ||||||||| Sbjct 50889 GAGG-TCCGTGCTCGCGACCT-TTTCCTTGCCCTCTGGATCCCCGATCTATTCATGAAGA 50832 Query 75732 GGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCG 75791 | || ||| || | | | ||| | || | ||||| | || || ||||| | | Sbjct 50831 GAGTCGAGAAGAACGCTGACTGGACCCTCATGTGTCCCAATGAGTGCCCCGGTCTGGCTG 50772 Query 75792 ACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC-- 75849 || || |||||||| || ||| | ||| ||||| || |||||| | | Sbjct 50771 ACTGCTACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGGGAGGGCAAGGGTC 50712 Query 75850 -CAATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAG 75907 ||| ||| | | || | | || | ||||| | || |||||| | | ||||| ||| Sbjct 50711 GCAA---GACCAT-CAAGGCCCAGAAGCTTTGGTACGCAATTCTCGAGGCTCAGACTGAG 50656 Query 75908 ACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAAT 75967 ||||| | || | ||||||||||||||||| ||| ||||| ||||| ||||| Sbjct 50655 ACTGGCAACCCTTTCATGCTTTACAAGGATGCCGCAAACCGCAAGAGCAACCAGAAGAAC 50596 Query 75968 TTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGAT 76027 | || || ||| ||||| || || ||||| || || | |||||| | ||| Sbjct 50595 CTCGGCACCATCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCCCCTGAT 50536 Query 76028 GAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCC 76065 ||| ||||| ||||| ||||| || |||||||||| Sbjct 50535 GAGGTCGCTGTCTGCAACTTGGCTTCTCTCGCCCTTCC 50498 >seq179 Length=397792 Score = 102 bits (112), Expect = 1e-16 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||||| | ||||| |||||||| | | || | ||| ||||||||| |||| Sbjct 380765 AAGAAGGCCGACTGGGCCTTGAAATGGATCAGCGACGAGAGCTCA-TCCTTCGCCCAGCG 380823 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 || |||| || || ||| ||||||||||||||| ||| | ||| | | |||| Sbjct 380824 TCTGGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCGTTCGCCTCCATTTT 380883 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | |||||||| ||||||||||| || || |||||| || || || || || || Sbjct 380884 CTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCG 380943 Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || ||||| || ||| || |||||| Sbjct 380944 CGACGAGGGCCTGCACACTGACTTTGCC 380971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596567206264480