Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq7 89.7 2e-12
>seq7
Length=178947
Score = 89.7 bits (98), Expect = 2e-12
Identities = 337/516 (65%), Gaps = 26/516 (5%)
Strand=Plus/Plus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|| ||||| | |||||| |||||||||||||| || |||||||||||||| || || ||
Sbjct 145954 GCCCCGTGAGCAATCATGCAATCACGCTCCATCTCTCCGAAACGAAGACCTCCGTCACGG 146013
Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGA-GATT--AACCATAGGACCGATGGAGCGGCTA 251601
|| | |||||| |||| || | ||| | |||| ||| ||| || | |||
Sbjct 146014 GCACGACCCTCCACAGGTTGCCTAGTCATGATTTGAAC---AGGGCCACGCGCACGGGCG 146070
Query 251602 TGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT- 251660
|| ||| || | |||||||| | ||||||||| | | || || | |||||
Sbjct 146071 TGAATCTTGTCGTCGACCATATGGCGCAATCGCTGGTAGTAAGTCGGTCCAAAGAAGACT 146130
Query 251661 ---GCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGA 251717
||||| || || || || || | | || ||||| | || ||| | ||
Sbjct 146131 TGCGCTCGCAGC---TTCCTG-CCTGTGTGGCCATTGTACATGATCTCAAATCCTCTTGA 146186
Query 251718 TTCATAACCAAGTT-TCT--GTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAA 251774
|| || || | | || | |||| || | || || || || || | ||
Sbjct 146187 TTGGTATCCTTGATCTCGAAGGAGCTGCGAGACTGAGTCGACAGTCAC--ATCTG-TGAA 146243
Query 251775 ACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTAAAAGTGTCTCTTT 251834
| |||| |||| || | | |||| | || || | || |||| | || ||| |
Sbjct 146244 AGGGGTGGCGTCGCCCTCCATACCCTTCAGAGTCGATACCTTGCTGAGTAGACACTCGAT 146303
Query 251835 CAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTT 251894
| || ||||| ||||||||| ||||| || || ||||||||||| ||||| || |
Sbjct 146304 TAAGTGAGCGATGGTCATACGAGACGGAATGGCGTGAGGATTGATGATAATGTCCGGCGT 146363
Query 251895 CAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATAA-TGTTTCCAATAGTTCC 251951
| || || | || ||||||||||| ||||| | |||| || ||||| || ||
Sbjct 146364 AATACCCTCGCCGGTAAAGGGCATATC---TTCCTGCCGATAAGTGACACCAATGGTGCC 146420
Query 251952 CTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
|||||| |||||||| || || || ||||||||
Sbjct 146421 CTTTTGGCCGTGACGTGAGGCAAATTTGTCACCAAT 146456
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471811546690177
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |