Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq35 194 2e-43
seq49 187 3e-41
seq272 145 9e-29
seq301 127 2e-23
seq179 114 2e-19
seq113 107 2e-17
seq147 100 3e-15
>seq35
Length=490854
Score = 194 bits (214), Expect = 2e-43
Identities = 276/389 (71%), Gaps = 6/389 (2%)
Strand=Plus/Minus
Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159
|||||||| ||||| ||| ||| ||| |||| ||||| ||||| ||||| |
Sbjct 208200 GGCGAGTCCCACGGCAAATCCGTTGGCGTCATTGTCGATGGCGTCCCGCCCGGCATGGCT 208141
Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219
||| ||||| ||||||| ||||||||| || | || ||||| || |||||| || || |
Sbjct 208140 CTGACCGAGTCCGACATTCAGCCTCAGCTGAACCGCCGCCGCCCCGGCCAGAGCTCAATC 208081
Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279
| ||||| || ||||| || |||||| |||| ||| || || ||| |||| ||
Sbjct 208080 ACGACGCCCCGAAACGAAAAGGACCGCGTCGTCATTCAGAGCGGTACCGAGTTCGGCGTC 208021
Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACT-- 18337
|| |||||| | || | ||| | | || ||| |||||||||||| ||||
Sbjct 208020 ACCCTCGGCACCCCGATTGGCATGCTCGTCCAGAACGAGGACCAGCGGCCCAAGGACTAC 207961
Query 18338 ----ATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393
| ||| ||| || | | || || || || |||||||||| |||||| | |
Sbjct 207960 GGCAACTCCACGATGGACATGTTTCCCCGCCCTTCCCACGCCGACTGGACCTACCTCGAG 207901
Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453
||||| ||| ||||||| || || || || ||||| || || ||||||||||| |
Sbjct 207900 AAGTATGGCGTCAAGGCCTCCTCCGGTGGCGGCCGCTCCTCGGCCCGCGAGACAATTGCC 207841
Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
||||||||||||||||| ||||||||||
Sbjct 207840 CGCGTCGCCGCCGGCGCCCTCGCCGAGAA 207812
Score = 113 bits (124), Expect = 6e-19
Identities = 123/161 (76%), Gaps = 3/161 (2%)
Strand=Plus/Minus
Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103
|| ||||||||||||||||| || || ||||| ||||| || | | || |||
Sbjct 207579 GATGACAGCATCGGCGGCACCGTCACCTGCGTCATCCGCAATCCTCCCTCGGCGCTGGGC 207520
Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163
||||| ||||| |||||| |||| || |||||| ||||||||||| ||||| |||
Sbjct 207519 GAGCCCTGCTTCGACAAGCTCGAAGCGCAGCTCGCGCACGCCATGCTCAGCATCCCCGCC 207460
Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTT--GCGGGTGCG 19202
|||||||| |||||||||||| | ||||| |||| ||||
Sbjct 207459 ACCAAGGGCTTCGAGATTGGC-TCAGGTTTCGGCGGTTGCG 207420
>seq49
Length=112291
Score = 187 bits (206), Expect = 3e-41
Identities = 333/488 (68%), Gaps = 15/488 (3%)
Strand=Plus/Plus
Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125
|| ||||||||||| ||||||| || ||||| || |||||||| | || ||||| ||
Sbjct 50990 TGATCGACGTAGCGAGCCGTGTTATTGAAGACACGAAGCATGGGGATGACTCCGTTCGAG 51049
Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185
|||||||||||| || | |||| ||| | ||| || | ||| ||| | ||
Sbjct 51050 GTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGGCGTTGAGACCA 51109
Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245
||||| |||||| ||||||||| | ||||| ||||||||||||||||| |||||
Sbjct 51110 ATGCCACCGGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATACCCTCA 51169
Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305
|| ||||| |||||||||| ||||| ||||| || || || || | || |||
Sbjct 51170 ATGGAGTCTTCCTTCATGTCGACGAGGAAGCAAGAAGACAGCTGGCACTGAGGGGTACCG 51229
Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365
||||||||||| ||||| | || |||||| |||| | ||||| || ||||||
Sbjct 51230 GCGTTGAAGAGTGTGGGAGAGGCGTGGGTGAAGAACTTGCTGGACATCAAGTTGTAGGTC 51289
Query 1630366 GCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGACG 1630425
||| |||||| || |||| | || || || ||||| || ||
Sbjct 51290 TCGATGACGCGC------------TCAACGTTGTCA---CCCCAGATGCCGACTGCAACA 51334
Query 1630426 CGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGAC 1630485
||||||| ||||| ||| || | |||| | | |||| | |||| ||||| ||
Sbjct 51335 CGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTGAGTAGGTATGAT 51394
Query 1630486 CGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGCG 1630545
| || |||| ||| ||| ||||| || || |||||||||| | |||||
Sbjct 51395 CTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCA 51454
Query 1630546 GCGTCGAG 1630553
| ||||||
Sbjct 51455 GAGTCGAG 51462
>seq272
Length=297088
Score = 145 bits (160), Expect = 9e-29
Identities = 173/233 (74%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067
|||||||||| ||||| ||||||| | |||| |||| | || |||||| | |
Sbjct 225015 TCGACGTCGTTCGCAATCGCATCAAGGGCTTCGCCCAGAAGAAGGTCACCCTGCCCCAGG 225074
Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127
| ||||||||| | |||||||||||||||||||| || | || || | ||||||||||
Sbjct 225075 GCCGCCACAAGCTCGTCATCCTCGACGAGGCCGACAGCATGACATCAGGCGCCCAGCAGG 225134
Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187
|||| || || ||||||| || |||||||||||||||| ||| | || ||||||
Sbjct 225135 CCCTCCGCCGGACGATGGAAATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAACC 225194
Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCGCT 1574238
||| | | |||||||| | || | |||||| |||||||| || ||||
Sbjct 225195 AGTCCAACAAGATCATCGAGCCGCTGC--AGTCGCGATGCGCCATCCTACGCT 225245
>seq301
Length=235411
Score = 127 bits (140), Expect = 2e-23
Identities = 90/103 (87%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
|||||||||||||||||||||| || || || | || |||||| | || ||||||||||
Sbjct 186994 CCAACTACCTCGACATCAAGCCCCTCCTTGACGTCGGATGCAAGACCGTCGCCAACATGA 187053
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
|||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 187054 TCAAGGGCAAGTCGCCCGAGGAGATCAGAAAGACGTTTAACAT 187096
>seq179
Length=397792
Score = 114 bits (126), Expect = 2e-19
Identities = 174/244 (71%), Gaps = 4/244 (2%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| | || ||| |||||| ||||||||||| || |||| || ||
Sbjct 381267 GCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGCCGAGGGAAATG 381208
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808
|||||| | ||| ||||||| | ||||||| ||| ||| || |||||||
Sbjct 381207 TTCTCCATGAAATCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGAC- 381149
Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868
| || || ||||| || || ||||| |||||||| ||| | | || |||||||||||
Sbjct 381148 CAAG-AGACGGTCAGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGA 381090
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928
||| || ||||| | ||| ||| ||||| | ||| |||| ||| || ||||| |
Sbjct 381089 GGAGAGCGCAAGGCAGAGCCTCAGTCAAGAACTCCTGCTCAATCTTGACCGCATCGACAA 381030
Query 868929 TGAT 868932
||||
Sbjct 381029 TGAT 381026
Score = 104 bits (114), Expect = 3e-16
Identities = 139/191 (73%), Gaps = 3/191 (2%)
Strand=Plus/Minus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|| ||||||||| ||| | |||||| |||| || || |||||||| || ||||||
Sbjct 380952 CCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTC 380893
Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299
|||||||| || |||| | ||| || ||| ||||| ||||| || ||||| |||
Sbjct 380892 TTGAGCCAGAAAATGGAGGCGAACGCACCGCTGAAGAAGATACCCTCAACAGCGGCGAAG 380833
Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359
| | || |||| ||| ||| | || || ||| | | ||||||| |||| ||||||
Sbjct 380832 GCAACCAGACGCTGGGCGAAG--GATGA-GCTCTCGTCGCTGATCCATTTCAAGGCCCAG 380776
Query 869360 TCGGCCTTTTT 869370
|||||||| ||
Sbjct 380775 TCGGCCTTCTT 380765
>seq113
Length=441198
Score = 107 bits (118), Expect = 2e-17
Identities = 102/129 (79%), Gaps = 6/129 (5%)
Strand=Plus/Plus
Query 1572461 TCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACAACGTG---GTCGGCGTCGGTG 1572517
||||||| | |||||||||||| ||||||| | |||| | ||||| ||||| |
Sbjct 310647 TCGATGATAAGCTGGGCGATGCGG---TCGCCCTCGGCAACCTCAAAGTCGGTGTCGGCG 310703
Query 1572518 TGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCATCGATGACGCCTGCGCCG 1572577
||||||||||||| ||| |||| |||||| ||||||||||| |||||||| ||||||
Sbjct 310704 TGGTTGAAGAGCAGGACCTTGACCTGGCCGCGGTAGTCGGCATCAATGACGCCGGCGCCG 310763
Query 1572578 ACGTCGATG 1572586
|||||||
Sbjct 310764 GTGTCGATG 310772
>seq147
Length=409564
Score = 100 bits (110), Expect = 3e-15
Identities = 246/364 (68%), Gaps = 17/364 (5%)
Strand=Plus/Plus
Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751
||||||||||| | |||||| | || || |||| | | | |||||||||||||||||||
Sbjct 278883 GGCGGCGGCGCCAATGGCGTC-AATGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGA 278941
Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811
|||||| || | | ||| | || || | ||||||||| | |||| |||||| ||||
Sbjct 278942 AGCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCGCGGTGGAGCTGGGACTCGGTGGTGC 279001
Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCA--AATAAGGGGCCACCAGA--GGA 1726867
| ||||| | |||||| | | | ||| || | || |||| ||| |
Sbjct 279002 GGGCGCCGATGGCGCCGACGGAGATGAAGTCGGCGAGGAACTGGGGG----GAGATTGTG 279057
Query 1726868 CTGAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCGG 1726927
||| | |||| ||| | |||| ||| | ||| | ||| |||| || || ||
Sbjct 279058 TCGAGCATCTCGCTGGCGATGGGC--ATC-CCCGCGGTGGTGAGGTCGCTGAAGAGCTGG 279114
Query 1726928 C--GCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGG 1726985
| | || || | ||||| | | | | | | ||| | ||| |||||| ||
Sbjct 279115 CGGGAGATGCGG--AGGCCCTTGTTGATCTTGAAGGTGGAGTCAATGTCCGGGTCGTTGA 279172
Query 1726986 CCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGC 1727045
||||||||||| |||||||| || || ||||| |||| ||||||||||||| ||||
Sbjct 279173 TGAGGCCCTTCCAGCCGACGGTGGTACGGGGCTTCTCGAGGTAGGCGCGCATGATGACGC 279232
Query 1727046 AAAG 1727049
| ||
Sbjct 279233 AGAG 279236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107112857236757
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