Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq35 194 2e-43 seq49 187 3e-41 seq272 145 9e-29 seq301 127 2e-23 seq179 114 2e-19 seq113 107 2e-17 seq147 100 3e-15 >seq35 Length=490854 Score = 194 bits (214), Expect = 2e-43 Identities = 276/389 (71%), Gaps = 6/389 (2%) Strand=Plus/Minus Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159 |||||||| ||||| ||| ||| ||| |||| ||||| ||||| ||||| | Sbjct 208200 GGCGAGTCCCACGGCAAATCCGTTGGCGTCATTGTCGATGGCGTCCCGCCCGGCATGGCT 208141 Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219 ||| ||||| ||||||| ||||||||| || | || ||||| || |||||| || || | Sbjct 208140 CTGACCGAGTCCGACATTCAGCCTCAGCTGAACCGCCGCCGCCCCGGCCAGAGCTCAATC 208081 Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279 | ||||| || ||||| || |||||| |||| ||| || || ||| |||| || Sbjct 208080 ACGACGCCCCGAAACGAAAAGGACCGCGTCGTCATTCAGAGCGGTACCGAGTTCGGCGTC 208021 Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACT-- 18337 || |||||| | || | ||| | | || ||| |||||||||||| |||| Sbjct 208020 ACCCTCGGCACCCCGATTGGCATGCTCGTCCAGAACGAGGACCAGCGGCCCAAGGACTAC 207961 Query 18338 ----ATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393 | ||| ||| || | | || || || || |||||||||| |||||| | | Sbjct 207960 GGCAACTCCACGATGGACATGTTTCCCCGCCCTTCCCACGCCGACTGGACCTACCTCGAG 207901 Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453 ||||| ||| ||||||| || || || || ||||| || || ||||||||||| | Sbjct 207900 AAGTATGGCGTCAAGGCCTCCTCCGGTGGCGGCCGCTCCTCGGCCCGCGAGACAATTGCC 207841 Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 ||||||||||||||||| |||||||||| Sbjct 207840 CGCGTCGCCGCCGGCGCCCTCGCCGAGAA 207812 Score = 113 bits (124), Expect = 6e-19 Identities = 123/161 (76%), Gaps = 3/161 (2%) Strand=Plus/Minus Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103 || ||||||||||||||||| || || ||||| ||||| || | | || ||| Sbjct 207579 GATGACAGCATCGGCGGCACCGTCACCTGCGTCATCCGCAATCCTCCCTCGGCGCTGGGC 207520 Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 ||||| ||||| |||||| |||| || |||||| ||||||||||| ||||| ||| Sbjct 207519 GAGCCCTGCTTCGACAAGCTCGAAGCGCAGCTCGCGCACGCCATGCTCAGCATCCCCGCC 207460 Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTT--GCGGGTGCG 19202 |||||||| |||||||||||| | ||||| |||| |||| Sbjct 207459 ACCAAGGGCTTCGAGATTGGC-TCAGGTTTCGGCGGTTGCG 207420 >seq49 Length=112291 Score = 187 bits (206), Expect = 3e-41 Identities = 333/488 (68%), Gaps = 15/488 (3%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || ||||||||||| ||||||| || ||||| || |||||||| | || ||||| || Sbjct 50990 TGATCGACGTAGCGAGCCGTGTTATTGAAGACACGAAGCATGGGGATGACTCCGTTCGAG 51049 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 |||||||||||| || | |||| ||| | ||| || | ||| ||| | || Sbjct 51050 GTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGGCGTTGAGACCA 51109 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 ||||| |||||| ||||||||| | ||||| ||||||||||||||||| ||||| Sbjct 51110 ATGCCACCGGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATACCCTCA 51169 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||||| |||||||||| ||||| ||||| || || || || | || ||| Sbjct 51170 ATGGAGTCTTCCTTCATGTCGACGAGGAAGCAAGAAGACAGCTGGCACTGAGGGGTACCG 51229 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365 ||||||||||| ||||| | || |||||| |||| | ||||| || |||||| Sbjct 51230 GCGTTGAAGAGTGTGGGAGAGGCGTGGGTGAAGAACTTGCTGGACATCAAGTTGTAGGTC 51289 Query 1630366 GCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGACG 1630425 ||| |||||| || |||| | || || || ||||| || || Sbjct 51290 TCGATGACGCGC------------TCAACGTTGTCA---CCCCAGATGCCGACTGCAACA 51334 Query 1630426 CGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGAC 1630485 ||||||| ||||| ||| || | |||| | | |||| | |||| ||||| || Sbjct 51335 CGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTGAGTAGGTATGAT 51394 Query 1630486 CGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGCG 1630545 | || |||| ||| ||| ||||| || || |||||||||| | ||||| Sbjct 51395 CTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCA 51454 Query 1630546 GCGTCGAG 1630553 | |||||| Sbjct 51455 GAGTCGAG 51462 >seq272 Length=297088 Score = 145 bits (160), Expect = 9e-29 Identities = 173/233 (74%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||||||||| ||||| ||||||| | |||| |||| | || |||||| | | Sbjct 225015 TCGACGTCGTTCGCAATCGCATCAAGGGCTTCGCCCAGAAGAAGGTCACCCTGCCCCAGG 225074 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | ||||||||| | |||||||||||||||||||| || | || || | |||||||||| Sbjct 225075 GCCGCCACAAGCTCGTCATCCTCGACGAGGCCGACAGCATGACATCAGGCGCCCAGCAGG 225134 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 |||| || || ||||||| || |||||||||||||||| ||| | || |||||| Sbjct 225135 CCCTCCGCCGGACGATGGAAATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAACC 225194 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCGCT 1574238 ||| | | |||||||| | || | |||||| |||||||| || |||| Sbjct 225195 AGTCCAACAAGATCATCGAGCCGCTGC--AGTCGCGATGCGCCATCCTACGCT 225245 >seq301 Length=235411 Score = 127 bits (140), Expect = 2e-23 Identities = 90/103 (87%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||||||||||||||| || || || | || |||||| | || |||||||||| Sbjct 186994 CCAACTACCTCGACATCAAGCCCCTCCTTGACGTCGGATGCAAGACCGTCGCCAACATGA 187053 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 |||||||||||||||||||||||||| | ||||| |||||||| Sbjct 187054 TCAAGGGCAAGTCGCCCGAGGAGATCAGAAAGACGTTTAACAT 187096 >seq179 Length=397792 Score = 114 bits (126), Expect = 2e-19 Identities = 174/244 (71%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| |||||| ||||||||||| || |||| || || Sbjct 381267 GCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGCCGAGGGAAATG 381208 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||| ||||||| | ||||||| ||| ||| || ||||||| Sbjct 381207 TTCTCCATGAAATCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGAC- 381149 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 | || || ||||| || || ||||| |||||||| ||| | | || ||||||||||| Sbjct 381148 CAAG-AGACGGTCAGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGA 381090 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 ||| || ||||| | ||| ||| ||||| | ||| |||| ||| || ||||| | Sbjct 381089 GGAGAGCGCAAGGCAGAGCCTCAGTCAAGAACTCCTGCTCAATCTTGACCGCATCGACAA 381030 Query 868929 TGAT 868932 |||| Sbjct 381029 TGAT 381026 Score = 104 bits (114), Expect = 3e-16 Identities = 139/191 (73%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||||||| ||| | |||||| |||| || || |||||||| || |||||| Sbjct 380952 CCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTC 380893 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| || |||| | ||| || ||| ||||| ||||| || ||||| ||| Sbjct 380892 TTGAGCCAGAAAATGGAGGCGAACGCACCGCTGAAGAAGATACCCTCAACAGCGGCGAAG 380833 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | | || |||| ||| ||| | || || ||| | | ||||||| |||| |||||| Sbjct 380832 GCAACCAGACGCTGGGCGAAG--GATGA-GCTCTCGTCGCTGATCCATTTCAAGGCCCAG 380776 Query 869360 TCGGCCTTTTT 869370 |||||||| || Sbjct 380775 TCGGCCTTCTT 380765 >seq113 Length=441198 Score = 107 bits (118), Expect = 2e-17 Identities = 102/129 (79%), Gaps = 6/129 (5%) Strand=Plus/Plus Query 1572461 TCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACAACGTG---GTCGGCGTCGGTG 1572517 ||||||| | |||||||||||| ||||||| | |||| | ||||| ||||| | Sbjct 310647 TCGATGATAAGCTGGGCGATGCGG---TCGCCCTCGGCAACCTCAAAGTCGGTGTCGGCG 310703 Query 1572518 TGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCATCGATGACGCCTGCGCCG 1572577 ||||||||||||| ||| |||| |||||| ||||||||||| |||||||| |||||| Sbjct 310704 TGGTTGAAGAGCAGGACCTTGACCTGGCCGCGGTAGTCGGCATCAATGACGCCGGCGCCG 310763 Query 1572578 ACGTCGATG 1572586 ||||||| Sbjct 310764 GTGTCGATG 310772 >seq147 Length=409564 Score = 100 bits (110), Expect = 3e-15 Identities = 246/364 (68%), Gaps = 17/364 (5%) Strand=Plus/Plus Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751 ||||||||||| | |||||| | || || |||| | | | ||||||||||||||||||| Sbjct 278883 GGCGGCGGCGCCAATGGCGTC-AATGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGA 278941 Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811 |||||| || | | ||| | || || | ||||||||| | |||| |||||| |||| Sbjct 278942 AGCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCGCGGTGGAGCTGGGACTCGGTGGTGC 279001 Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCA--AATAAGGGGCCACCAGA--GGA 1726867 | ||||| | |||||| | | | ||| || | || |||| ||| | Sbjct 279002 GGGCGCCGATGGCGCCGACGGAGATGAAGTCGGCGAGGAACTGGGGG----GAGATTGTG 279057 Query 1726868 CTGAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCGG 1726927 ||| | |||| ||| | |||| ||| | ||| | ||| |||| || || || Sbjct 279058 TCGAGCATCTCGCTGGCGATGGGC--ATC-CCCGCGGTGGTGAGGTCGCTGAAGAGCTGG 279114 Query 1726928 C--GCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGG 1726985 | | || || | ||||| | | | | | | ||| | ||| |||||| || Sbjct 279115 CGGGAGATGCGG--AGGCCCTTGTTGATCTTGAAGGTGGAGTCAATGTCCGGGTCGTTGA 279172 Query 1726986 CCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGC 1727045 ||||||||||| |||||||| || || ||||| |||| ||||||||||||| |||| Sbjct 279173 TGAGGCCCTTCCAGCCGACGGTGGTACGGGGCTTCTCGAGGTAGGCGCGCATGATGACGC 279232 Query 1727046 AAAG 1727049 | || Sbjct 279233 AGAG 279236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107112857236757