Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq6 132 4e-26 seq57 95.1 1e-14 >seq6 Length=179136 Score = 132 bits (146), Expect = 4e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || ||||||||||| || ||| | | Sbjct 30614 ATGCAAATCTTCGTCAAGACTCTGACAGGCAAGACGATTACGCTCGAGGTCGAATCTTCA 30673 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || |||||||| || Sbjct 30674 GACACCATTGACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAG 30733 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || || ||||| |||||| | | | |||| ||||||||| Sbjct 30734 CAGCGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGTCGCACCCTGTCGGATTATAAC 30793 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 ||||| ||||| || || || || Sbjct 30794 ATTCAGAAGGAGTCTACCCTGCA 30816 >seq57 Length=484889 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || ||||| || || || || || | || Sbjct 315699 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 315758 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || || || || ||||| || Sbjct 315759 GACACCATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 315818 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||| ||||| | | | | ||||| || ||| Sbjct 315819 CAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCAGACTACAAC 315878 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| |||| |||| |||| || || Sbjct 315879 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 315925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895794785880