Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq272 150 3e-30 seq49 149 1e-29 seq301 132 8e-25 seq179 104 4e-16 seq113 87.8 3e-11 >seq272 Length=297088 Score = 150 bits (166), Expect = 3e-30 Identities = 181/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 2019194 CCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGC 2019253 |||||| | |||||||||||| | |||||||||| ||||||||| || | || || | Sbjct 225064 CCTGCCCCAGGGCCGCCACAAGCTCGTCATCCTCGACGAGGCCGACAGCATGACATCAGG 225123 Query 2019254 GGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCT 2019313 ||||||||||||||||| ||| ||||||| ||| ||||||||||||| || || | Sbjct 225124 CGCCCAGCAGGCCCTCCGCCGGACGATGGAAATCTACTCCAACACGACGCGCTTCGCCTT 225183 Query 2019314 GGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCG 2019373 ||||||||| ||| | | ||||||| | || ||| || ||||||||| | || Sbjct 225184 CGCCTGCAACCAGTCCAACAAGATCATCGAGCCGCTGCAGTCGCGATGCGCCATCCTACG 225243 Query 2019374 CTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGA 2019433 || || || ||||| || | ||| ||| ||||| | | ||||| || ||||| Sbjct 225244 CTACGCCCGACTCACTGATGAGCAGGTCGTTAAACGTCTCCTTCAAATTATTGAGGCCGA 225303 Query 2019434 AAAGGT 2019439 |||||| Sbjct 225304 AAAGGT 225309 >seq49 Length=112291 Score = 149 bits (164), Expect = 1e-29 Identities = 337/506 (67%), Gaps = 27/506 (5%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 || ||||| ||||| ||||||| || ||||| || |||||||| | | ||||| || Sbjct 50990 TGATCGACGTAGCGAGCCGTGTTATTGAAGACACGAAGCATGGGGATGACTCCGTTCGAG 51049 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 |||||||||||| || | |||| ||| | ||| || | ||| ||| | || Sbjct 51050 GTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGGCGTTGAGACCA 51109 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 ||||| |||||| ||||||||| | ||||| | || ||||| |||||||| ||||| Sbjct 51110 ATGCCACCGGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATACCCTCA 51169 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGC---GCGCCGTG 2073777 || ||||| |||||||||| | || ||||| || || || ||| | | || Sbjct 51170 ATGGAGTCTTCCTTCATGTCGACGAGGAAGCAAGAAGA---CAGCTGGCACTGAGGGGTA 51226 Query 2073778 CCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAG 2073837 ||||| |||||||| ||||| | || ||| | ||| |||||| | |||| Sbjct 51227 CCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGAAGAACTTGCTGGACATCAAGTTGTAG 51286 Query 2073838 GTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCG 2073897 || ||| |||||| | |||| | || || || ||||| || Sbjct 51287 GTCTCGATGACGCGC------------TCAACGTTGTCA---CCCCAGATGCCGACTGCA 51331 Query 2073898 ACGCGCATGATCATGTACTGGGGTCGCTCGACGA---CGGCGTCGCGCACCTTGGTCAGG 2073954 || ||||||||||||| ||| |||| |||| | | | ||||| | |||| ||| Sbjct 51332 ACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCG---AGCTTGAGTAGG 51388 Query 2073955 TAGGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGG 2074014 || || | ||||||| | ||| ||||| |||| | |||||| |||| | Sbjct 51389 TATGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACA 51448 Query 2074015 ATGGCGGCGTCGAGGGCCTCCTTGTG 2074040 ||||| | |||||| | |||||||| Sbjct 51449 ATGGCAGAGTCGAGCTCTTCCTTGTG 51474 >seq301 Length=235411 Score = 132 bits (146), Expect = 8e-25 Identities = 91/103 (88%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||||||||||||||||||||| || | || ||||||||||| |||||| | | Sbjct 186994 CCAACTACCTCGACATCAAGCCCCTCCTTGACGTCGGATGCAAGACCGTCGCCAACATGA 187053 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 |||||||||||||||||||||| ||| | ||||| |||||||| Sbjct 187054 TCAAGGGCAAGTCGCCCGAGGAGATCAGAAAGACGTTTAACAT 187096 >seq179 Length=397792 Score = 104 bits (114), Expect = 4e-16 Identities = 166/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || ||| | || ||| |||||| ||||||||||| || |||| || || |||||| Sbjct 381258 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGCCGAGGGAAATGTTCTCCATG 381199 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GAGCGACGCAAGCAGGC 794025 | ||| ||||||| | | |||| ||| ||| || ||||||| |||| || | Sbjct 381198 AAATCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGAC-CAAG-AGAC 381141 Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCA 794085 |||| || ||||| ||||||||||| ||| | | || ||||||||||| ||| || Sbjct 381140 GGTCAGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAGCGC 381081 Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 ||||| | ||| | | ||||| | ||| |||| ||| || |||| ||||| Sbjct 381080 AAGGCAGAGCCTCAGTCAAGAACTCCTGCTCAATCTTGACCGCATCGACAATGAT 381026 Score = 96.9 bits (106), Expect = 5e-14 Identities = 95/120 (79%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 794548 GTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606 ||||| |||||| |||||||| || | || | || ||||||| |||||||||||| Sbjct 380698 GTGTCAATGGCGTTAAAGAGGTACGTGCGCTGCG-CAGGCTCCTTGATGTAGGTGTCGAT 380640 Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| |||||||||||||| ||||| ||||| || || ||||||||| || || ||||| Sbjct 380639 GAGTAGCGAGTAGGTCTCAGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCA 380580 Score = 86.0 bits (94), Expect = 1e-10 Identities = 135/192 (70%), Gaps = 5/192 (3%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||||||| ||| | |||||| ||| || || |||||||| || |||||| Sbjct 380952 CCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTC 380893 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| || |||| ||| || ||| ||||| ||||| || ||||| ||| Sbjct 380892 TTGAGCCAGAAAATGGAGGCGAACGCACCGCTGAAGAAGATACCCTCAACAGCGGCGAAG 380833 Query 794461 CCGACGAGCCGCTCGGCAAAAG-TGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | || || |||| ||| || | || || ||| | | ||||||| |||| ||||| Sbjct 380832 GCAACCAGACGCTGGGCGAAGGATG----AGCTCTCGTCGCTGATCCATTTCAAGGCCCA 380777 Query 794520 CTCTGCCttttt 794531 || ||||| || Sbjct 380776 GTCGGCCTTCTT 380765 >seq113 Length=441198 Score = 87.8 bits (96), Expect = 3e-11 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 2017545 TCGATGAGCAACTGGGCGATCCGCGTGCCCCCGCCCACGACGTGATCGGCGTCGGTATGG 2017604 ||||||| | ||||||||| || |||| || | || | |||| ||||| ||| Sbjct 310647 TCGATGATAAGCTGGGCGATGCGGTCGCCCTCGGCAACCTCAAAGTCGGTGTCGGCGTGG 310706 Query 2017605 TTAAAGAGCATGACGCCAACCTCGCCTCGATAGTCGGCATCGATGACGCCGGCGCCGACG 2017664 || ||||||| ||| |||| ||| || ||||||||||| ||||||||||||||| | Sbjct 310707 TTGAAGAGCAGGACCTTGACCTGGCCGCGGTAGTCGGCATCAATGACGCCGGCGCCGGTG 310766 Query 2017665 TCGATG 2017670 |||||| Sbjct 310767 TCGATG 310772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916212253765919