Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq272 150 3e-30
seq49 149 1e-29
seq301 132 8e-25
seq179 104 4e-16
seq113 87.8 3e-11
>seq272
Length=297088
Score = 150 bits (166), Expect = 3e-30
Identities = 181/246 (74%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 2019194 CCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGC 2019253
|||||| | |||||||||||| | |||||||||| ||||||||| || | || || |
Sbjct 225064 CCTGCCCCAGGGCCGCCACAAGCTCGTCATCCTCGACGAGGCCGACAGCATGACATCAGG 225123
Query 2019254 GGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCT 2019313
||||||||||||||||| ||| ||||||| ||| ||||||||||||| || || |
Sbjct 225124 CGCCCAGCAGGCCCTCCGCCGGACGATGGAAATCTACTCCAACACGACGCGCTTCGCCTT 225183
Query 2019314 GGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCG 2019373
||||||||| ||| | | ||||||| | || ||| || ||||||||| | ||
Sbjct 225184 CGCCTGCAACCAGTCCAACAAGATCATCGAGCCGCTGCAGTCGCGATGCGCCATCCTACG 225243
Query 2019374 CTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGA 2019433
|| || || ||||| || | ||| ||| ||||| | | ||||| || |||||
Sbjct 225244 CTACGCCCGACTCACTGATGAGCAGGTCGTTAAACGTCTCCTTCAAATTATTGAGGCCGA 225303
Query 2019434 AAAGGT 2019439
||||||
Sbjct 225304 AAAGGT 225309
>seq49
Length=112291
Score = 149 bits (164), Expect = 1e-29
Identities = 337/506 (67%), Gaps = 27/506 (5%)
Strand=Plus/Plus
Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600
|| ||||| ||||| ||||||| || ||||| || |||||||| | | ||||| ||
Sbjct 50990 TGATCGACGTAGCGAGCCGTGTTATTGAAGACACGAAGCATGGGGATGACTCCGTTCGAG 51049
Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660
|||||||||||| || | |||| ||| | ||| || | ||| ||| | ||
Sbjct 51050 GTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGGCGTTGAGACCA 51109
Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720
||||| |||||| ||||||||| | ||||| | || ||||| |||||||| |||||
Sbjct 51110 ATGCCACCGGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATACCCTCA 51169
Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGC---GCGCCGTG 2073777
|| ||||| |||||||||| | || ||||| || || || ||| | | ||
Sbjct 51170 ATGGAGTCTTCCTTCATGTCGACGAGGAAGCAAGAAGA---CAGCTGGCACTGAGGGGTA 51226
Query 2073778 CCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAG 2073837
||||| |||||||| ||||| | || ||| | ||| |||||| | ||||
Sbjct 51227 CCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGAAGAACTTGCTGGACATCAAGTTGTAG 51286
Query 2073838 GTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCG 2073897
|| ||| |||||| | |||| | || || || ||||| ||
Sbjct 51287 GTCTCGATGACGCGC------------TCAACGTTGTCA---CCCCAGATGCCGACTGCA 51331
Query 2073898 ACGCGCATGATCATGTACTGGGGTCGCTCGACGA---CGGCGTCGCGCACCTTGGTCAGG 2073954
|| ||||||||||||| ||| |||| |||| | | | ||||| | |||| |||
Sbjct 51332 ACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCG---AGCTTGAGTAGG 51388
Query 2073955 TAGGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGG 2074014
|| || | ||||||| | ||| ||||| |||| | |||||| |||| |
Sbjct 51389 TATGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACA 51448
Query 2074015 ATGGCGGCGTCGAGGGCCTCCTTGTG 2074040
||||| | |||||| | ||||||||
Sbjct 51449 ATGGCAGAGTCGAGCTCTTCCTTGTG 51474
>seq301
Length=235411
Score = 132 bits (146), Expect = 8e-25
Identities = 91/103 (88%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
|||||||||||||||||||||||||||| || | || ||||||||||| |||||| | |
Sbjct 186994 CCAACTACCTCGACATCAAGCCCCTCCTTGACGTCGGATGCAAGACCGTCGCCAACATGA 187053
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753
|||||||||||||||||||||| ||| | ||||| ||||||||
Sbjct 187054 TCAAGGGCAAGTCGCCCGAGGAGATCAGAAAGACGTTTAACAT 187096
>seq179
Length=397792
Score = 104 bits (114), Expect = 4e-16
Identities = 166/235 (71%), Gaps = 4/235 (2%)
Strand=Plus/Minus
Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967
|| ||| | || ||| |||||| ||||||||||| || |||| || || ||||||
Sbjct 381258 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGCCGAGGGAAATGTTCTCCATG 381199
Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GAGCGACGCAAGCAGGC 794025
| ||| ||||||| | | |||| ||| ||| || ||||||| |||| || |
Sbjct 381198 AAATCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGAC-CAAG-AGAC 381141
Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCA 794085
|||| || ||||| ||||||||||| ||| | | || ||||||||||| ||| ||
Sbjct 381140 GGTCAGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAGCGC 381081
Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140
||||| | ||| | | ||||| | ||| |||| ||| || |||| |||||
Sbjct 381080 AAGGCAGAGCCTCAGTCAAGAACTCCTGCTCAATCTTGACCGCATCGACAATGAT 381026
Score = 96.9 bits (106), Expect = 5e-14
Identities = 95/120 (79%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 794548 GTGTCGATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606
||||| |||||| |||||||| || | || | || ||||||| ||||||||||||
Sbjct 380698 GTGTCAATGGCGTTAAAGAGGTACGTGCGCTGCG-CAGGCTCCTTGATGTAGGTGTCGAT 380640
Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
||| |||||||||||||| ||||| ||||| || || ||||||||| || || |||||
Sbjct 380639 GAGTAGCGAGTAGGTCTCAGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCA 380580
Score = 86.0 bits (94), Expect = 1e-10
Identities = 135/192 (70%), Gaps = 5/192 (3%)
Strand=Plus/Minus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|| ||||||||| ||| | |||||| ||| || || |||||||| || ||||||
Sbjct 380952 CCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGACCACGCTTC 380893
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|||||||| || |||| ||| || ||| ||||| ||||| || ||||| |||
Sbjct 380892 TTGAGCCAGAAAATGGAGGCGAACGCACCGCTGAAGAAGATACCCTCAACAGCGGCGAAG 380833
Query 794461 CCGACGAGCCGCTCGGCAAAAG-TGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519
| || || |||| ||| || | || || ||| | | ||||||| |||| |||||
Sbjct 380832 GCAACCAGACGCTGGGCGAAGGATG----AGCTCTCGTCGCTGATCCATTTCAAGGCCCA 380777
Query 794520 CTCTGCCttttt 794531
|| ||||| ||
Sbjct 380776 GTCGGCCTTCTT 380765
>seq113
Length=441198
Score = 87.8 bits (96), Expect = 3e-11
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 2017545 TCGATGAGCAACTGGGCGATCCGCGTGCCCCCGCCCACGACGTGATCGGCGTCGGTATGG 2017604
||||||| | ||||||||| || |||| || | || | |||| ||||| |||
Sbjct 310647 TCGATGATAAGCTGGGCGATGCGGTCGCCCTCGGCAACCTCAAAGTCGGTGTCGGCGTGG 310706
Query 2017605 TTAAAGAGCATGACGCCAACCTCGCCTCGATAGTCGGCATCGATGACGCCGGCGCCGACG 2017664
|| ||||||| ||| |||| ||| || ||||||||||| ||||||||||||||| |
Sbjct 310707 TTGAAGAGCAGGACCTTGACCTGGCCGCGGTAGTCGGCATCAATGACGCCGGCGCCGGTG 310766
Query 2017665 TCGATG 2017670
||||||
Sbjct 310767 TCGATG 310772
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916212253765919
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |