Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq57 138 7e-28 seq6 105 4e-18 seq259 96.9 2e-15 >seq57 Length=484889 Score = 138 bits (152), Expect = 7e-28 Identities = 164/220 (75%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | |||| ||||||||| ||||| ||||| || ||| |||| | || Sbjct 315911 CAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCGTC 315852 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || |||||||| ||||||||||| || |||||||| | || | |||||||| || Sbjct 315851 CTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTATC 315792 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || ||||| || | ||||| || | ||| || |||| ||| | Sbjct 315791 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGA 315736 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 | ||||| ||||| |||||||| || |||||||||||||| Sbjct 315735 TAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGAT 315696 >seq6 Length=179136 Score = 105 bits (116), Expect = 4e-18 Identities = 135/184 (73%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| || || |||| | || || |||||||| |||||||| Sbjct 30577 CTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCGTCCTCAAGTTGCTTGCCGGCGAA 30518 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || |||||||| | || | ||||||||||| | || || || || | Sbjct 30517 GATAAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTCAC--A 30460 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | | ||||| ||| | ||| || |||| ||| |||||||| || |||||||||| Sbjct 30459 T--TGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCT 30402 Query 34962 TTAC 34965 | || Sbjct 30401 TGAC 30398 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| |||||||||||||||||| ||||| ||| |||| |||| Sbjct 30825 AGGACGAGATGCAGGGTAGACTCCTTCTGAATGTTATAATCCGACAGGGTGCGACCATCC 30766 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| || ||||||| || |||||||| | || | ||||||||||| Sbjct 30765 TCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCT 30706 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | || | || | ||||| || | || || ||| Sbjct 30705 TGGATCTTCGACTTGACATTGTCAATGGTGTCTGAAGATTCGACCTCGAGCGTAATCGTC 30646 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| || ||||| ||||| Sbjct 30645 TTGCCTGTCAGAGTCTTGACGAAGATTTGCAT 30614 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| || |||||||||||||| || || | | |||| | || Sbjct 31053 AGGACAAGGTGAAGCGTAGATTCCTTCTGAATGTTGTAATCGCTCAAGGTGCGGCCGTCT 30994 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||| || ||||| || || || |||||||| | || | ||||||||||| Sbjct 30993 TCCAATTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCC 30934 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | |||| || | |||||| || | || || ||| Sbjct 30933 TGAATCTTGGACTTCACGTTGTCAATCGTGTCGGAAGACTCGACTTCTAACGTGATTGTC 30874 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||||| || ||||||||||| Sbjct 30873 TTTCCGGTCAATGTCTTGACGAAGATCTGCAT 30842 Score = 86.0 bits (94), Expect = 4e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| |||||||||||| || ||||| || ||| | || | || Sbjct 30313 AGAACCAAGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAAAGGGTTCGGCCGTCC 30254 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| || || || |||||| | || | || |||||||| Sbjct 30253 TCAAGCTGCTTGCCAGCGAAGATAAGACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTCC 30194 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || ||||| |||| || |||||| Sbjct 30193 TGAATCTTGGACTTGACGTTGTCAATAGTATCGGAGGATTCGACCTCAAGAGTGATGGTC 30134 Query 34946 TTTCCCGTGA 34955 || || |||| Sbjct 30133 TTGCCGGTGA 30124 >seq259 Length=323629 Score = 96.9 bits (106), Expect = 2e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| || || || ||| |||| | || || || ||||| || ||||||| Sbjct 46419 CCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGA 46360 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| || || ||||| | || | ||||||||||| | || || ||||| Sbjct 46359 TCAAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 46300 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || |||||| |||| ||| |||||||| ||||| |||||||| || | Sbjct 46299 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 46240 Query 34968 A 34968 | Sbjct 46239 A 46239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691525828699