Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq49 253 2e-62
seq57 129 6e-25
seq179 123 2e-23
seq6 120 3e-22
seq259 96.9 3e-15
>seq49
Length=112291
Score = 253 bits (280), Expect = 2e-62
Identities = 999/1548 (65%), Gaps = 55/1548 (4%)
Strand=Plus/Plus
Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319
|| || || || ||||| || || || || || ||| | || | |||| |||| | |||
Sbjct 49937 TTGACGACTTGGAACTCTCCAGCAAGAACACGACGCTGGTAAATGTTGGACGTATAGGGT 49996
Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379
|| || |||||||||||||||||||||||| || | || || |||||| || ||
Sbjct 49997 TCGAAGCACTCGTTGTTGCCCAAAATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACG 50056
Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439
||||| |||||| | ||| | | || || | |||||||| |||| |||||
Sbjct 50057 AGCAGACTGTTGCGGACACCATGCTCCTTGATCTGCTCCTTCAGAGAGTCCCAATCCCAA 50116
Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499
|| || || | || ||||||||||||||||| || ||||| | | || |
Sbjct 50117 AGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAATAGGAGAG 50176
Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCG--AGCG 148557
|||||||||| | ||| | || | | || |||| | | | | | | || |
Sbjct 50177 CCCTCGTACGTGGAGTAGGTACCTTCCTCCTTGGCCA--ACTGAACCGACATAGTCAGAG 50234
Query 148558 CGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG--CA-GCGCCGCCGACTCGCTTT 148614
| | | |||||| ||||| || | | ||||||| || | ||| | | ||
Sbjct 50235 CAGCATGGTAAATGGTCTCAAAGATCTTCTTGTTGAGGTCACGGGCCTCAG---GAGATT 50291
Query 148615 CGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGG 148674
|| | ||||| || || | || || |||||||| ||||| || || | || ||||
Sbjct 50292 CGAATGGCATGCGAAGGGCGAGGAAAGCATCGGCAAGACCCTGGACACCAAGACCGATGG 50351
Query 148675 GCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGATG 148733
| ||||| |||||| ||| || ||| || | || ||||||||| || |||
Sbjct 50352 GACGGTGACGCATGTTGCTATTGCGGGC-CTCAGGAACGGGGTAGTGGTTGACATCAATG 50410
Query 148734 ATCTTG-TCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA 148792
|||||| ||||| ||||| || || |||| || | | ||| | || |||||
Sbjct 50411 ATCTTGTTCAAG-TTGCGAACGACGACCTGAGTGACCTCATGAAGCTTCTGGAAGTCGTA 50469
Query 148793 CTTGTCATCTACGATG----CATCG---GT--TCACGGCGATAGAGGCTAGATTGCACAC 148843
| || | || || || || || | ||||| ||| || | ||||| ||
Sbjct 50470 ---GACACCCTCGTTGTAGTCAACGAAAGTAGGAAGGGCGAGAGAAGCCAAGTTGCAGAC 50526
Query 148844 GGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGAT 148903
|| |||||| ||||||| |||||| | |||||| | ||| || ||| || |||
Sbjct 50527 AGCGACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGAT 50586
Query 148904 CACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963
||| | |||||| || |||||||||| ||| || |||||||| |||||| | ||
Sbjct 50587 GGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTTGCGGCATCCTTGTAAAGCATGAAAGG 50646
Query 148964 TCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCGCGCGCAC 149020
|||||| || ||| | || | || | ||| | || | ||| || |
Sbjct 50647 GTTGCCAGTCTCAGTCTGAGCCTCGAGAATTGCGTACCAA---AGCTTCTGGGC-----C 50698
Query 149021 TTGCTGCTCGTAGCGA------CCCTCCTGCTCGTA--TAAAGTATACAGCCGCTCGAAC 149072
||| || || | |||| |||||| ||||||| | ||| | || |||||||
Sbjct 50699 TTGATGGTC-TTGCGACCCTTGCCCTCCCGCTCGTACTTCTCGTACAAGGC--CTCGAAC 50755
Query 149073 GCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACG 149132
||||||||||||| || | ||||||||||||| | || |||||||| | ||| |
Sbjct 50756 TCCTCGCCGTAGCAGTCAGCCAGACCGGGGCACTCATTGGGACACATGAGGGTCCAGTCA 50815
Query 149133 CCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCG 149192
||| | | || | |||||| || |||||||| | |||||| || | ||||||
Sbjct 50816 GCGTTCTTCTCGACTCTCTTCATGAATAGATCGGGGATCCAGAGGGCAAGGAAAAGGTCG 50875
Query 149193 CGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGA-GCACGCTGAATATGTC 149251
|| || | || || ||| ||| |||||| | | | || | || | ||
Sbjct 50876 CGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCATGAACTC-AAAGACATC 50934
Query 149252 CGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTC 149308
|||||||| ||||||| ||| | |||| || || ||| || || || || ||
Sbjct 50935 GGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTATTACCACCTTGATC 50994
Query 149309 GACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCC 149368
||||| ||| || |||| || || || |||| ||| || | || | | |||||
Sbjct 50995 GACGTAGCGAGCCGTGTTATTGAAGACACGAAGCATGGGGATGACTCCGTTCGAGGTGCC 51054
Query 149369 GTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCC 149428
||| || | ||| ||| || || | ||| |||||| || |||||
Sbjct 51055 GTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGGCGTTGAGACCAATGCC 51114
Query 149429 GCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCT 149488
||| | ||| ||||| |||||| |||||| |||||| ||||| |||
Sbjct 51115 ACCGGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATACCCTCAATGGA 51174
Query 149489 GTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGC 149548
||| ||||||| | || ||||| || ||| || | | || |||||
Sbjct 51175 GTCTTCCTTCATGTCGACGAGGAAGCAAGAAGACAGCTGGCACTGAGGGGTACCGGCGTT 51234
Query 149549 GAACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGA 149607
||| | ||||| |||||| || || | || |||| ||||| | ||| | |||||
Sbjct 51235 GAAGAGTGTGGGAGAGGCGTGGGTGAAGAACTTGCTGG-ACATCAAGTTGTAGGTCTCGA 51293
Query 149608 GCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCG 149667
||||| || | || || || |||||| | || || ||||| | ||| |||||||
Sbjct 51294 TGACGCGCTCAACGTTGTCACCCCAGATGCCGACTGCAACACGCATGATCATGTGCTGCG 51353
Query 149668 GTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGC 149727
||| ||| || | ||| | | ||||| | ||| | || || |||||| |||
Sbjct 51354 GTCTCTCGGCAATCTTGCCGTCGAGCTTGAGTAGGTATGATCTCTCCAGGGTCTTGAAGC 51413
Query 149728 CAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775
| ||||| | ||||| ||||||||| ||| | ||||||| | |||||
Sbjct 51414 CGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCAGAGTCGA 51461
>seq57
Length=484889
Score = 129 bits (142), Expect = 6e-25
Identities = 148/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| || ||||| || | ||| ||||||||||||||| ||
Sbjct 315896 GGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCC 315837
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || || |||||||||||||| |||||||| ||||| || |||||| |||
Sbjct 315836 AGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGACTT 315777
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||||| | |||||| || | ||||| || ||||| ||||| ||
Sbjct 315776 GACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGT 315717
Query 133643 TTTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 315716 CTTGACGAAGATCTGCATG 315698
>seq179
Length=397792
Score = 123 bits (136), Expect = 2e-23
Identities = 334/508 (66%), Gaps = 11/508 (2%)
Strand=Plus/Minus
Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410
|| ||| ||| | || || ||||| || ||||| || || || | | |||||||| |
Sbjct 381262 CTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGCCGAGGGAAATGTTCTC 381203
Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470
||| || ||||| |||||| | || || || | ||| | || | ||
Sbjct 381202 CATGAAATCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGACCAAGAG 381143
Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGC 120530
||||| || || ||||||||||||| ||| | | | ||||||||| || | ||
Sbjct 381142 ACGGTCAGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAGC 381083
Query 120531 CACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590
|||| ||| || || ||||||| |||||| | ||||| || | ||| |
Sbjct 381082 GCAAGGCAGAGCCTCAGTCAAGAACTCCTGCTCAATCTTGACCGCATCGACAATGATGTC 381023
Query 120591 GAGCATAG--TG--TGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACG 120646
||| || || |||| ||| | || | | | ||| | ||||| |
Sbjct 381022 CTCAATAACCTGCTTGTTGGGGCG----GTGCTTGAGGTGAGA---GTACAATAGGCAGG 380970
Query 120647 CAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGG 120706
||||||| |||||||||||||||||||| || || ||||||||| || ||||| || |
Sbjct 380969 CAAAGTCAGTGTGCAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAG 380910
Query 120707 GCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGC 120766
|||||| || | |||||| |||| |||| ||| || || ||||| | |
Sbjct 380909 GCATGAGACCACGCTTCTTGAGCCAGAAAATGGAGGCGAACGCACCGCTGAAGAAGATAC 380850
Query 120767 CCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCC 120826
|||| || ||| ||||| |||| |||| ||| || | | ||| | | |||||
Sbjct 380849 CCTCAACAGCGGCGAAGGCAACCAGACGCTGGGCGAAGGATGAGCTCTCGTCGCTGATCC 380790
Query 120827 ACTTCATGGCCCACTCGGCCTTTTTGCG 120854
| |||| |||||| |||||||| |||||
Sbjct 380789 ATTTCAAGGCCCAGTCGGCCTTCTTGCG 380762
>seq6
Length=179136
Score = 120 bits (132), Expect = 3e-22
Identities = 151/205 (74%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | ||| ||||| ||||| || || ||||| || ||| ||| | ||||||||||
Sbjct 30817 ATGCAGGGTAGACTCCTTCTGAATGTTATAATCCGACAGGGTGCGACCA-TCCTCGAGCT 30759
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
|||| || || | || | ||||||||||||||||||||||| |||||||| |||||
Sbjct 30758 GCTTTCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCT 30699
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||||| | |||| ||||| | | || || |||| || | || ||||| |
Sbjct 30698 TCGACTTGACATTGTCAATGGTGTCTGAAGATTCGACCTCGAGCGTAATCGTCTTGCCTG 30639
Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660
||||||| || ||||| || |||||
Sbjct 30638 TCAGAGTCTTGACGAAGATTTGCAT 30614
Score = 116 bits (128), Expect = 4e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| || || ||||| || |||||||||| || ||| ||| || | ||||||||
Sbjct 31038 GTAGATTCCTTCTGAATGTTGTAATCGCTCAAGGTGCGGCCGTCTTCCAATTGCTTGCCA 30979
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| ||||||| ||||||||||| || |||||||| |||||||| ||||| |||
Sbjct 30978 GCGAAAATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTGGACTTC 30919
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | |||| |||||||| | ||| || || | |||| || || ||||||| ||
Sbjct 30918 ACGTTGTCAATCGTGTCGGAAGACTCGACTTCTAACGTGATTGTCTTTCCGGTCAATGTC 30859
Query 133644 TTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 30858 TTGACGAAGATCTGCAT 30842
Score = 102 bits (112), Expect = 8e-17
Identities = 134/184 (73%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512
|| || | ||| ||||| ||||| |||||||| ||| | || || || ||||| |
Sbjct 30307 AAGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAAAGGGTTCGGCCG--TCCTCAA 30250
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
|||||||||| ||| | || || ||||| ||||| || ||||||||||||||||| |
Sbjct 30249 GCTGCTTGCCAGCGAAGATAAGACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTCCTGAA 30190
Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
|||| ||||| | |||| || |||| || || || || | |||| ||| ||||
Sbjct 30189 TCTTGGACTTGACGTTGTCAATAGTATCGGAGGATTCGACCTCAAGAGTGATGGTCTTGC 30130
Query 133633 CGGT 133636
||||
Sbjct 30129 CGGT 30126
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/188 (72%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| ||| || ||| ||| |||||| || ||||||||
Sbjct 30582 GTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACC-GTCCTCAAGTTGCTTGCC 30524
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || || ||||||||||| || || ||||| |||||||| ||||| |||
Sbjct 30523 GGCGAAGATAAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTT 30464
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | || | || || | | ||| || || | ||||| ||| |||||||| || ||
Sbjct 30463 CACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGT 30404
Query 133643 TTTTACGA 133650
|| ||||
Sbjct 30403 CTTGACGA 30396
>seq259
Length=323629
Score = 96.9 bits (106), Expect = 3e-15
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACT--CTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTG 133520
||| |||| | ||||| || ||||||||| | ||| |||||| |||||||||
Sbjct 46429 GGTAGACTAACCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTG 46370
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|| ||| | || | ||||| ||||| || || ||||| |||||||| |||||| |
Sbjct 46369 CCAGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGAC 46310
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|||| | || | |||||| | || ||| || || | ||| | ||| || || |||||
Sbjct 46309 TTGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGG 46250
Query 133641 GTTTTTACGAAA 133652
|| || ||||||
Sbjct 46249 GTCTTCACGAAA 46238
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483418860274040
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