Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq49 253 2e-62 seq57 129 6e-25 seq179 123 2e-23 seq6 120 3e-22 seq259 96.9 3e-15 >seq49 Length=112291 Score = 253 bits (280), Expect = 2e-62 Identities = 999/1548 (65%), Gaps = 55/1548 (4%) Strand=Plus/Plus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || || || ||||| || || || || || ||| | || | |||| |||| | ||| Sbjct 49937 TTGACGACTTGGAACTCTCCAGCAAGAACACGACGCTGGTAAATGTTGGACGTATAGGGT 49996 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 || || |||||||||||||||||||||||| || | || || |||||| || || Sbjct 49997 TCGAAGCACTCGTTGTTGCCCAAAATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACG 50056 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 ||||| |||||| | ||| | | || || | |||||||| |||| ||||| Sbjct 50057 AGCAGACTGTTGCGGACACCATGCTCCTTGATCTGCTCCTTCAGAGAGTCCCAATCCCAA 50116 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499 || || || | || ||||||||||||||||| || ||||| | | || | Sbjct 50117 AGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAATAGGAGAG 50176 Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCG--AGCG 148557 |||||||||| | ||| | || | | || |||| | | | | | | || | Sbjct 50177 CCCTCGTACGTGGAGTAGGTACCTTCCTCCTTGGCCA--ACTGAACCGACATAGTCAGAG 50234 Query 148558 CGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG--CA-GCGCCGCCGACTCGCTTT 148614 | | | |||||| ||||| || | | ||||||| || | ||| | | || Sbjct 50235 CAGCATGGTAAATGGTCTCAAAGATCTTCTTGTTGAGGTCACGGGCCTCAG---GAGATT 50291 Query 148615 CGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGG 148674 || | ||||| || || | || || |||||||| ||||| || || | || |||| Sbjct 50292 CGAATGGCATGCGAAGGGCGAGGAAAGCATCGGCAAGACCCTGGACACCAAGACCGATGG 50351 Query 148675 GCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGATG 148733 | ||||| |||||| ||| || ||| || | || ||||||||| || ||| Sbjct 50352 GACGGTGACGCATGTTGCTATTGCGGGC-CTCAGGAACGGGGTAGTGGTTGACATCAATG 50410 Query 148734 ATCTTG-TCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA 148792 |||||| ||||| ||||| || || |||| || | | ||| | || ||||| Sbjct 50411 ATCTTGTTCAAG-TTGCGAACGACGACCTGAGTGACCTCATGAAGCTTCTGGAAGTCGTA 50469 Query 148793 CTTGTCATCTACGATG----CATCG---GT--TCACGGCGATAGAGGCTAGATTGCACAC 148843 | || | || || || || || | ||||| ||| || | ||||| || Sbjct 50470 ---GACACCCTCGTTGTAGTCAACGAAAGTAGGAAGGGCGAGAGAAGCCAAGTTGCAGAC 50526 Query 148844 GGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGAT 148903 || |||||| ||||||| |||||| | |||||| | ||| || ||| || ||| Sbjct 50527 AGCGACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGAT 50586 Query 148904 CACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||| | |||||| || |||||||||| ||| || |||||||| |||||| | || Sbjct 50587 GGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTTGCGGCATCCTTGTAAAGCATGAAAGG 50646 Query 148964 TCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCGCGCGCAC 149020 |||||| || ||| | || | || | ||| | || | ||| || | Sbjct 50647 GTTGCCAGTCTCAGTCTGAGCCTCGAGAATTGCGTACCAA---AGCTTCTGGGC-----C 50698 Query 149021 TTGCTGCTCGTAGCGA------CCCTCCTGCTCGTA--TAAAGTATACAGCCGCTCGAAC 149072 ||| || || | |||| |||||| ||||||| | ||| | || ||||||| Sbjct 50699 TTGATGGTC-TTGCGACCCTTGCCCTCCCGCTCGTACTTCTCGTACAAGGC--CTCGAAC 50755 Query 149073 GCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACG 149132 ||||||||||||| || | ||||||||||||| | || |||||||| | ||| | Sbjct 50756 TCCTCGCCGTAGCAGTCAGCCAGACCGGGGCACTCATTGGGACACATGAGGGTCCAGTCA 50815 Query 149133 CCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCG 149192 ||| | | || | |||||| || |||||||| | |||||| || | |||||| Sbjct 50816 GCGTTCTTCTCGACTCTCTTCATGAATAGATCGGGGATCCAGAGGGCAAGGAAAAGGTCG 50875 Query 149193 CGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGA-GCACGCTGAATATGTC 149251 || || | || || ||| ||| |||||| | | | || | || | || Sbjct 50876 CGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCATGAACTC-AAAGACATC 50934 Query 149252 CGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTC 149308 |||||||| ||||||| ||| | |||| || || ||| || || || || || Sbjct 50935 GGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTATTACCACCTTGATC 50994 Query 149309 GACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCC 149368 ||||| ||| || |||| || || || |||| ||| || | || | | ||||| Sbjct 50995 GACGTAGCGAGCCGTGTTATTGAAGACACGAAGCATGGGGATGACTCCGTTCGAGGTGCC 51054 Query 149369 GTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCC 149428 ||| || | ||| ||| || || | ||| |||||| || ||||| Sbjct 51055 GTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGGCGTTGAGACCAATGCC 51114 Query 149429 GCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCT 149488 ||| | ||| ||||| |||||| |||||| |||||| ||||| ||| Sbjct 51115 ACCGGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATACCCTCAATGGA 51174 Query 149489 GTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGC 149548 ||| ||||||| | || ||||| || ||| || | | || ||||| Sbjct 51175 GTCTTCCTTCATGTCGACGAGGAAGCAAGAAGACAGCTGGCACTGAGGGGTACCGGCGTT 51234 Query 149549 GAACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGA 149607 ||| | ||||| |||||| || || | || |||| ||||| | ||| | ||||| Sbjct 51235 GAAGAGTGTGGGAGAGGCGTGGGTGAAGAACTTGCTGG-ACATCAAGTTGTAGGTCTCGA 51293 Query 149608 GCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCG 149667 ||||| || | || || || |||||| | || || ||||| | ||| ||||||| Sbjct 51294 TGACGCGCTCAACGTTGTCACCCCAGATGCCGACTGCAACACGCATGATCATGTGCTGCG 51353 Query 149668 GTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGC 149727 ||| ||| || | ||| | | ||||| | ||| | || || |||||| ||| Sbjct 51354 GTCTCTCGGCAATCTTGCCGTCGAGCTTGAGTAGGTATGATCTCTCCAGGGTCTTGAAGC 51413 Query 149728 CAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775 | ||||| | ||||| ||||||||| ||| | ||||||| | ||||| Sbjct 51414 CGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCAGAGTCGA 51461 >seq57 Length=484889 Score = 129 bits (142), Expect = 6e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| || | ||| ||||||||||||||| || Sbjct 315896 GGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCC 315837 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||||||||| |||||||| ||||| || |||||| ||| Sbjct 315836 AGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGACTT 315777 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| || | ||||| || ||||| ||||| || Sbjct 315776 GACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGT 315717 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 315716 CTTGACGAAGATCTGCATG 315698 >seq179 Length=397792 Score = 123 bits (136), Expect = 2e-23 Identities = 334/508 (66%), Gaps = 11/508 (2%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| ||| | || || ||||| || ||||| || || || | | |||||||| | Sbjct 381262 CTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGCCGAGGGAAATGTTCTC 381203 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| | || || || | ||| | || | || Sbjct 381202 CATGAAATCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGACCAAGAG 381143 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGC 120530 ||||| || || ||||||||||||| ||| | | | ||||||||| || | || Sbjct 381142 ACGGTCAGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAGC 381083 Query 120531 CACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590 |||| ||| || || ||||||| |||||| | ||||| || | ||| | Sbjct 381082 GCAAGGCAGAGCCTCAGTCAAGAACTCCTGCTCAATCTTGACCGCATCGACAATGATGTC 381023 Query 120591 GAGCATAG--TG--TGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACG 120646 ||| || || |||| ||| | || | | | ||| | ||||| | Sbjct 381022 CTCAATAACCTGCTTGTTGGGGCG----GTGCTTGAGGTGAGA---GTACAATAGGCAGG 380970 Query 120647 CAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGG 120706 ||||||| |||||||||||||||||||| || || ||||||||| || ||||| || | Sbjct 380969 CAAAGTCAGTGTGCAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAG 380910 Query 120707 GCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGC 120766 |||||| || | |||||| |||| |||| ||| || || ||||| | | Sbjct 380909 GCATGAGACCACGCTTCTTGAGCCAGAAAATGGAGGCGAACGCACCGCTGAAGAAGATAC 380850 Query 120767 CCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCC 120826 |||| || ||| ||||| |||| |||| ||| || | | ||| | | ||||| Sbjct 380849 CCTCAACAGCGGCGAAGGCAACCAGACGCTGGGCGAAGGATGAGCTCTCGTCGCTGATCC 380790 Query 120827 ACTTCATGGCCCACTCGGCCTTTTTGCG 120854 | |||| |||||| |||||||| ||||| Sbjct 380789 ATTTCAAGGCCCAGTCGGCCTTCTTGCG 380762 >seq6 Length=179136 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || || ||||| || ||| ||| | |||||||||| Sbjct 30817 ATGCAGGGTAGACTCCTTCTGAATGTTATAATCCGACAGGGTGCGACCA-TCCTCGAGCT 30759 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || | ||||||||||||||||||||||| |||||||| ||||| Sbjct 30758 GCTTTCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCT 30699 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | |||| ||||| | | || || |||| || | || ||||| | Sbjct 30698 TCGACTTGACATTGTCAATGGTGTCTGAAGATTCGACCTCGAGCGTAATCGTCTTGCCTG 30639 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||| || ||||| || ||||| Sbjct 30638 TCAGAGTCTTGACGAAGATTTGCAT 30614 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| || |||||||||| || ||| ||| || | |||||||| Sbjct 31038 GTAGATTCCTTCTGAATGTTGTAATCGCTCAAGGTGCGGCCGTCTTCCAATTGCTTGCCA 30979 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| ||||||| ||||||||||| || |||||||| |||||||| ||||| ||| Sbjct 30978 GCGAAAATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTGGACTTC 30919 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| |||||||| | ||| || || | |||| || || ||||||| || Sbjct 30918 ACGTTGTCAATCGTGTCGGAAGACTCGACTTCTAACGTGATTGTCTTTCCGGTCAATGTC 30859 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 30858 TTGACGAAGATCTGCAT 30842 Score = 102 bits (112), Expect = 8e-17 Identities = 134/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512 || || | ||| ||||| ||||| |||||||| ||| | || || || ||||| | Sbjct 30307 AAGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAAAGGGTTCGGCCG--TCCTCAA 30250 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||||||| ||| | || || ||||| ||||| || ||||||||||||||||| | Sbjct 30249 GCTGCTTGCCAGCGAAGATAAGACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTCCTGAA 30190 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||||| | |||| || |||| || || || || | |||| ||| |||| Sbjct 30189 TCTTGGACTTGACGTTGTCAATAGTATCGGAGGATTCGACCTCAAGAGTGATGGTCTTGC 30130 Query 133633 CGGT 133636 |||| Sbjct 30129 CGGT 30126 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| || ||| ||| |||||| || |||||||| Sbjct 30582 GTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACC-GTCCTCAAGTTGCTTGCC 30524 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || || ||||| |||||||| ||||| ||| Sbjct 30523 GGCGAAGATAAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTT 30464 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || || | | ||| || || | ||||| ||| |||||||| || || Sbjct 30463 CACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGT 30404 Query 133643 TTTTACGA 133650 || |||| Sbjct 30403 CTTGACGA 30396 >seq259 Length=323629 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 133463 GGTGGACT--CTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTG 133520 ||| |||| | ||||| || ||||||||| | ||| |||||| ||||||||| Sbjct 46429 GGTAGACTAACCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTG 46370 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | || | ||||| ||||| || || ||||| |||||||| |||||| | Sbjct 46369 CCAGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGAC 46310 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | || | |||||| | || ||| || || | ||| | ||| || || ||||| Sbjct 46309 TTGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGG 46250 Query 133641 GTTTTTACGAAA 133652 || || |||||| Sbjct 46249 GTCTTCACGAAA 46238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418860274040