Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq6 86.0 4e-12 seq57 82.4 5e-11 >seq6 Length=179136 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || ||||| ||||| || || ||||| | || || | || ||||| ||||| Sbjct 30805 CTCCTTCTGAATGTTATAATCCGACAGGGTGCGACCATCCTCGAGCTGCTTTCCAGCAAA 30746 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||||||||||||| || | || | || || ||||| || ||| | | |||| Sbjct 30745 GATCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTC-GACTTGACAT 30687 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | |||||| ||||| || || | ||| ||||| || ||||| | || || | Sbjct 30686 TGTCAATGGTGTCTGAAGATTCGACCTCGAGCGTAATCGTCTTGCCTGTCAGAGTCTTGA 30627 Query 33737 CAAAGATCTGCATA 33750 | ||||| |||||| Sbjct 30626 CGAAGATTTGCATA 30613 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||||||| | ||||| |||| |||||||| || || || ||| Sbjct 31032 TCCTTCTGAATGTTGTAATCGCTCAAGGTGCGGCCGTCTTCCAATTGCTTGCCAGCGAAA 30973 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | ||||||||| || | || | || || ||||| ||| || ||| || | Sbjct 30972 ATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTGGACTTC-ACGTT 30914 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | |||||| || || || || | |||||| || || || || || || || || Sbjct 30913 GTCAATCGTGTCGGAAGACTCGACTTCTAACGTGATTGTCTTTCCGGTCAATGTCTTGAC 30854 Query 33738 AAAGATCTGCATA 33750 |||||||||||| Sbjct 30853 GAAGATCTGCATA 30841 >seq57 Length=484889 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || | |||| || || ||| ||| || || |||||||| || || Sbjct 315926 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGA 315867 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| |||| || | || ||||| || || |||| |||||||| || | || Sbjct 315866 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGG 315807 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || || || || | ||| ||| | ||||||| || |||| Sbjct 315806 GATGCCCTCCTTATCCTGGATCTTGGACTTGA-CATTGTCGATGGTGTCGGACGACTCCA 315748 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | || || || ||||||||||| Sbjct 315747 CCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 315699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328702714048320