Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq6 86.0 4e-12
seq57 82.4 5e-11
>seq6
Length=179136
Score = 86.0 bits (94), Expect = 4e-12
Identities = 137/194 (71%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617
||| || || ||||| ||||| || || ||||| | || || | || ||||| |||||
Sbjct 30805 CTCCTTCTGAATGTTATAATCCGACAGGGTGCGACCATCCTCGAGCTGCTTTCCAGCAAA 30746
Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677
|||||||||||||| || | || | || || ||||| || ||| | | ||||
Sbjct 30745 GATCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTC-GACTTGACAT 30687
Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736
||| | |||||| ||||| || || | ||| ||||| || ||||| | || || |
Sbjct 30686 TGTCAATGGTGTCTGAAGATTCGACCTCGAGCGTAATCGTCTTGCCTGTCAGAGTCTTGA 30627
Query 33737 CAAAGATCTGCATA 33750
| ||||| ||||||
Sbjct 30626 CGAAGATTTGCATA 30613
Score = 84.2 bits (92), Expect = 1e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618
|| || || |||||||||||| | ||||| |||| |||||||| || || || |||
Sbjct 31032 TCCTTCTGAATGTTGTAATCGCTCAAGGTGCGGCCGTCTTCCAATTGCTTGCCAGCGAAA 30973
Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678
|| | ||||||||| || | || | || || ||||| ||| || ||| || |
Sbjct 30972 ATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTGGACTTC-ACGTT 30914
Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737
||| | |||||| || || || || | |||||| || || || || || || || ||
Sbjct 30913 GTCAATCGTGTCGGAAGACTCGACTTCTAACGTGATTGTCTTTCCGGTCAATGTCTTGAC 30854
Query 33738 AAAGATCTGCATA 33750
||||||||||||
Sbjct 30853 GAAGATCTGCATA 30841
>seq57
Length=484889
Score = 82.4 bits (90), Expect = 5e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || || | |||| || || ||| ||| || || |||||||| || ||
Sbjct 315926 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGA 315867
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||| ||||| |||| || | || ||||| || || |||| |||||||| || | ||
Sbjct 315866 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGG 315807
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| || || || || || || || | ||| ||| | ||||||| || ||||
Sbjct 315806 GATGCCCTCCTTATCCTGGATCTTGGACTTGA-CATTGTCGATGGTGTCGGACGACTCCA 315748
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| |||| ||||| || || || || | || || || |||||||||||
Sbjct 315747 CCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 315699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328702714048320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |