Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq49 163 4e-34 seq179 150 3e-30 seq272 145 1e-28 seq113 93.3 6e-13 seq147 86.0 9e-11 >seq49 Length=112291 Score = 163 bits (180), Expect = 4e-34 Identities = 343/505 (68%), Gaps = 25/505 (5%) Strand=Plus/Minus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||| | |||||| ||||||| | ||| ||| ||||| |||| ||||| Sbjct 51474 CACAAGGAAGAGCTCGACTCTGCCATTGTCTACGACCGCGACTTCAACTACCAATACTTC 51415 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCG-CGATATTGTCGTCGAGCG 259800 || | |||| || | || ||||| || ||| || || | | | |||| | Sbjct 51414 GGCTTCAAGACCCTGGAGAGATCATACCT-ACTCAAGCTCGACGGCAAGATTGCCGAGAG 51356 Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860 || ||| | ||| |||||||||| || | ||| | |||| | ||||| Sbjct 51355 ACCGCAGCACATGATCATGCGTGTTGCAGTCGGCA--TCTGGGGT----------GACAA 51308 Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAG 259919 | | |||| ||| ||| |||||| | ||||| ||||| ||| |||||| | Sbjct 51307 CG---TTGAGCGCGTCATCGAGACCTACAACTTGATGTC-CAGCAAGTTCTTCACCCACG 51252 Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGC---GCCCGCAGAATTCGTCGTGCTTTC 259976 | | ||||| ||||| || ||||| || || | ||| || | || || ||||| | Sbjct 51251 CCTCTCCCACACTCTTCAACGCCGGTACCCCTCAGTGCCAGCTG---TCTTCTTGCTTCC 51195 Query 259977 TGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGC 260036 | | |||||||||| || || || ||||| ||||| |||||||||||| ||||| Sbjct 51194 TCGTCGACATGAAGGAAGACTCCATTGAGGGTATCTACGACACGCTCAAGACCTGCGCCA 51135 Query 260037 TCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCG 260096 | ||||||||| |||||| ||||| ||| | ||| ||| | || ||| | ||| Sbjct 51134 TGATCTCCAAGATGGCCGGTGGCATTGGTCTCAACGCCCACCGCATCCGTGCCACTGGCT 51075 Query 260097 CCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTA 260156 |||| | || |||||||||||| || ||||| | | ||||||||||| || || | Sbjct 51074 CCTATATTGCCGGCACCAACGGCACCTCGAACGGAGTCATCCCCATGCTTCGTGTCTTCA 51015 Query 260157 ACGACACGGCGCGCTACGTCGACCA 260181 | ||||||| ||||||||||| || Sbjct 51014 ATAACACGGCTCGCTACGTCGATCA 50990 >seq179 Length=397792 Score = 150 bits (166), Expect = 3e-30 Identities = 390/594 (66%), Gaps = 69/594 (12%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || |||||||||||||| || ||||||||||||||| | || | Sbjct 380366 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATC 380424 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| | | | ||| || ||| | ||| Sbjct 380425 TGTCCAAGGATCTCCACG----ACTGGAACAACAAGATCAACGATGATGAGAAGTACTTC 380480 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||| |||||||||| || |||||| ||| |||||||| |||||||| | Sbjct 380481 ATCTCCCACATCCTCGCCTTCTT-CGCCGCATCCGACGGCATCGTCAATGAGAACCTCGT 380539 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | ||||| | |||||||| | || ||||| |||| || ||||| |||||||| Sbjct 380540 TGAGCGCTTCAGCGGCGAGGTCCAGATTCCCGAGGCTCGTTGCTTCTACGGTTTCCAGAT 380599 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||| |||||||| ||||||||||| || |||||||||||| ||||||| Sbjct 380600 CATGATGGAGAACATTCACTCTGAGACCTACTCGCTACTCATCGACACCTACATCAAGGA 380659 Query 1456068 CCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACAC------GGTGCCGT------ 1456114 || | || | || |||||||| |||||| ||||| | || | | Sbjct 380660 GCCTG-CGCAGCGCACGTACCTCTTTAACGCCATTGACACTAGTATGTTGACATGACATG 380718 Query 1456115 --CGGTGA------------------------------------GGAAAAAGGCCGACTG 1456136 | |||| | || ||||||||||| Sbjct 380719 TACTGTGAATGCATCGCTAACTCGCATTGCAGTCCCCGCCATTCGCAAGAAGGCCGACTG 380778 Query 1456137 GGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTT 1456196 ||| |||| ||||||| | | ||| | ||| | ||| ||| |||| || || | ||| Sbjct 380779 GGCCTTGAAATGGATCAGCGACGAGAG-CTC-ATCCTTCGCCCAGCGTCTGGTTGCCTTC 380836 Query 1456197 GCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAG 1456255 ||||| || ||||| ||||| ||| || ||| | |||| || |||||||||||| Sbjct 380837 GCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCGTTCGCCTCCATTTTCTGGCTCAAGAAG 380896 Query 1456256 CGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 || || |||||||| |||| | ||| |||||| | ||| ||||||||| Sbjct 380897 CGTGGTCTCATGCCTGGTC-TGACCTTCTCCAACGAGCTCATCTCTCGCGACGA 380949 >seq272 Length=297088 Score = 145 bits (160), Expect = 1e-28 Identities = 179/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 332858 TCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATT 332917 |||||||| || | |||| |||||||| || || |||||| | |||||||| | | Sbjct 225261 TCAGTGAGTCGGGCGTAGCGTAGGATGGCGCATCGCGACTGCAGCGGCTCGATGATCTTG 225202 Query 332918 GACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGAC 332977 ||| ||||||||| | ||| || |||||||| |||| | ||||||| ||| Sbjct 225201 TTGGACTGGTTGCAGGCGAAGGCGAAGCGCGTCGTGTTGGAGTAGATTTCCATCGTCCGG 225142 Query 332978 CGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTG 333037 ||||||||||| ||||| | | || | || |||||||||||||||||||| || |||| Sbjct 225141 CGGAGGGCCTGCTGGGCGCCTGATGTCATGCTGTCGGCCTCGTCGAGGATGACGAGCTTG 225082 Query 333038 TGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACG 333097 ||||| || || ||||| ||| | ||| |||| | |||||| ||||| ||| Sbjct 225081 TGGCGGCCCTGGGGCAGGGTGACCTTCTTCTGGGCGAAGCCCTTGATGCGATTGCGAACG 225022 Query 333098 ACGTC 333102 ||||| Sbjct 225021 ACGTC 225017 >seq113 Length=441198 Score = 93.3 bits (102), Expect = 6e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 334525 CATCGACGTTGGCGCCGGCGTCCTTGATGTCGACTATCGCGGCGAGGTTGGCGTCATGCT 334584 ||||||| |||||||||||| |||||| |||||| |||||| |||| ||| |||| Sbjct 310772 CATCGACACCGGCGCCGGCGTCATTGATGCCGACTACCGCGGCCAGGTCAAGGTCCTGCT 310713 Query 334585 TTTCAACCATACCGACGCCGACTATGTCGTCGGCNNNGGCGCACGCATCGCCCAG 334639 |||||||| ||||| |||||| || || | | |||| |||||||||||| Sbjct 310712 CTTCAACCACGCCGACACCGACTTTGAGGTTGCCGAGGGCGACCGCATCGCCCAG 310658 >seq147 Length=409564 Score = 86.0 bits (94), Expect = 9e-11 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 |||||| |||| || |||||||||||| |||| | ||||||||| | || || | ||| Sbjct 279017 GGCGCCATCGGCGCCCGCACCACCGAGTCCCAGCTCCACCGCGAGCTCGCCTCCGGCCTG 278958 Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGC 165886 | | ||| | |||||||| ||| |||||||||||| | | |||| | ||| | || || Sbjct 278957 TCCTTCCCCGTCGGCTTCAAGAACGGCACCGACGGCAACCTCGGCGTC-GCCATTGACGC 278899 Query 165887 CGTGCGCACTGCCGCCCAGCCACACACC 165914 | | || | |||||| |||| |||| Sbjct 278898 CATTGGCGCCGCCGCC--GCCAAGCACC 278873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177780238960002