Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq49 163 4e-34
seq179 150 3e-30
seq272 145 1e-28
seq113 93.3 6e-13
seq147 86.0 9e-11
>seq49
Length=112291
Score = 163 bits (180), Expect = 4e-34
Identities = 343/505 (68%), Gaps = 25/505 (5%)
Strand=Plus/Minus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||||||| | |||||| ||||||| | ||| ||| ||||| |||| |||||
Sbjct 51474 CACAAGGAAGAGCTCGACTCTGCCATTGTCTACGACCGCGACTTCAACTACCAATACTTC 51415
Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCG-CGATATTGTCGTCGAGCG 259800
|| | |||| || | || ||||| || ||| || || | | | |||| |
Sbjct 51414 GGCTTCAAGACCCTGGAGAGATCATACCT-ACTCAAGCTCGACGGCAAGATTGCCGAGAG 51356
Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860
|| ||| | ||| |||||||||| || | ||| | |||| | |||||
Sbjct 51355 ACCGCAGCACATGATCATGCGTGTTGCAGTCGGCA--TCTGGGGT----------GACAA 51308
Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAG 259919
| | |||| ||| ||| |||||| | ||||| ||||| ||| |||||| |
Sbjct 51307 CG---TTGAGCGCGTCATCGAGACCTACAACTTGATGTC-CAGCAAGTTCTTCACCCACG 51252
Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGC---GCCCGCAGAATTCGTCGTGCTTTC 259976
| | ||||| ||||| || ||||| || || | ||| || | || || ||||| |
Sbjct 51251 CCTCTCCCACACTCTTCAACGCCGGTACCCCTCAGTGCCAGCTG---TCTTCTTGCTTCC 51195
Query 259977 TGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGC 260036
| | |||||||||| || || || ||||| ||||| |||||||||||| |||||
Sbjct 51194 TCGTCGACATGAAGGAAGACTCCATTGAGGGTATCTACGACACGCTCAAGACCTGCGCCA 51135
Query 260037 TCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCG 260096
| ||||||||| |||||| ||||| ||| | ||| ||| | || ||| | |||
Sbjct 51134 TGATCTCCAAGATGGCCGGTGGCATTGGTCTCAACGCCCACCGCATCCGTGCCACTGGCT 51075
Query 260097 CCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTA 260156
|||| | || |||||||||||| || ||||| | | ||||||||||| || || |
Sbjct 51074 CCTATATTGCCGGCACCAACGGCACCTCGAACGGAGTCATCCCCATGCTTCGTGTCTTCA 51015
Query 260157 ACGACACGGCGCGCTACGTCGACCA 260181
| ||||||| ||||||||||| ||
Sbjct 51014 ATAACACGGCTCGCTACGTCGATCA 50990
>seq179
Length=397792
Score = 150 bits (166), Expect = 3e-30
Identities = 390/594 (66%), Gaps = 69/594 (12%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || |||||||||||||| || ||||||||||||||| | || |
Sbjct 380366 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATC 380424
Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887
| | || |||| ||||| | | | ||| || ||| | |||
Sbjct 380425 TGTCCAAGGATCTCCACG----ACTGGAACAACAAGATCAACGATGATGAGAAGTACTTC 380480
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
||| ||| |||||||||| || |||||| ||| |||||||| |||||||| |
Sbjct 380481 ATCTCCCACATCCTCGCCTTCTT-CGCCGCATCCGACGGCATCGTCAATGAGAACCTCGT 380539
Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007
| ||||| | |||||||| | || ||||| |||| || ||||| ||||||||
Sbjct 380540 TGAGCGCTTCAGCGGCGAGGTCCAGATTCCCGAGGCTCGTTGCTTCTACGGTTTCCAGAT 380599
Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
| || || ||||| |||||||| ||||||||||| || |||||||||||| |||||||
Sbjct 380600 CATGATGGAGAACATTCACTCTGAGACCTACTCGCTACTCATCGACACCTACATCAAGGA 380659
Query 1456068 CCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACAC------GGTGCCGT------ 1456114
|| | || | || |||||||| |||||| ||||| | || | |
Sbjct 380660 GCCTG-CGCAGCGCACGTACCTCTTTAACGCCATTGACACTAGTATGTTGACATGACATG 380718
Query 1456115 --CGGTGA------------------------------------GGAAAAAGGCCGACTG 1456136
| |||| | || |||||||||||
Sbjct 380719 TACTGTGAATGCATCGCTAACTCGCATTGCAGTCCCCGCCATTCGCAAGAAGGCCGACTG 380778
Query 1456137 GGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTT 1456196
||| |||| ||||||| | | ||| | ||| | ||| ||| |||| || || | |||
Sbjct 380779 GGCCTTGAAATGGATCAGCGACGAGAG-CTC-ATCCTTCGCCCAGCGTCTGGTTGCCTTC 380836
Query 1456197 GCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAG 1456255
||||| || ||||| ||||| ||| || ||| | |||| || ||||||||||||
Sbjct 380837 GCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCGTTCGCCTCCATTTTCTGGCTCAAGAAG 380896
Query 1456256 CGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309
|| || |||||||| |||| | ||| |||||| | ||| |||||||||
Sbjct 380897 CGTGGTCTCATGCCTGGTC-TGACCTTCTCCAACGAGCTCATCTCTCGCGACGA 380949
>seq272
Length=297088
Score = 145 bits (160), Expect = 1e-28
Identities = 179/245 (73%), Gaps = 0/245 (0%)
Strand=Plus/Minus
Query 332858 TCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATT 332917
|||||||| || | |||| |||||||| || || |||||| | |||||||| | |
Sbjct 225261 TCAGTGAGTCGGGCGTAGCGTAGGATGGCGCATCGCGACTGCAGCGGCTCGATGATCTTG 225202
Query 332918 GACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGAC 332977
||| ||||||||| | ||| || |||||||| |||| | ||||||| |||
Sbjct 225201 TTGGACTGGTTGCAGGCGAAGGCGAAGCGCGTCGTGTTGGAGTAGATTTCCATCGTCCGG 225142
Query 332978 CGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTG 333037
||||||||||| ||||| | | || | || |||||||||||||||||||| || ||||
Sbjct 225141 CGGAGGGCCTGCTGGGCGCCTGATGTCATGCTGTCGGCCTCGTCGAGGATGACGAGCTTG 225082
Query 333038 TGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACG 333097
||||| || || ||||| ||| | ||| |||| | |||||| ||||| |||
Sbjct 225081 TGGCGGCCCTGGGGCAGGGTGACCTTCTTCTGGGCGAAGCCCTTGATGCGATTGCGAACG 225022
Query 333098 ACGTC 333102
|||||
Sbjct 225021 ACGTC 225017
>seq113
Length=441198
Score = 93.3 bits (102), Expect = 6e-13
Identities = 89/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 334525 CATCGACGTTGGCGCCGGCGTCCTTGATGTCGACTATCGCGGCGAGGTTGGCGTCATGCT 334584
||||||| |||||||||||| |||||| |||||| |||||| |||| ||| ||||
Sbjct 310772 CATCGACACCGGCGCCGGCGTCATTGATGCCGACTACCGCGGCCAGGTCAAGGTCCTGCT 310713
Query 334585 TTTCAACCATACCGACGCCGACTATGTCGTCGGCNNNGGCGCACGCATCGCCCAG 334639
|||||||| ||||| |||||| || || | | |||| ||||||||||||
Sbjct 310712 CTTCAACCACGCCGACACCGACTTTGAGGTTGCCGAGGGCGACCGCATCGCCCAG 310658
>seq147
Length=409564
Score = 86.0 bits (94), Expect = 9e-11
Identities = 110/148 (74%), Gaps = 4/148 (3%)
Strand=Plus/Minus
Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827
|||||| |||| || |||||||||||| |||| | ||||||||| | || || | |||
Sbjct 279017 GGCGCCATCGGCGCCCGCACCACCGAGTCCCAGCTCCACCGCGAGCTCGCCTCCGGCCTG 278958
Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGC 165886
| | ||| | |||||||| ||| |||||||||||| | | |||| | ||| | || ||
Sbjct 278957 TCCTTCCCCGTCGGCTTCAAGAACGGCACCGACGGCAACCTCGGCGTC-GCCATTGACGC 278899
Query 165887 CGTGCGCACTGCCGCCCAGCCACACACC 165914
| | || | |||||| |||| ||||
Sbjct 278898 CATTGGCGCCGCCGCC--GCCAAGCACC 278873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177780238960002
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |