Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq6 134 1e-26
seq57 118 1e-21
>seq6
Length=179136
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | ||||| || || || || ||||| |||||||| || ||
Sbjct 30840 CCACCGCGGAGGCGAAGGACGAGATGCAGGGTAGACTCCTTCTGAATGTTATAATCCGAC 30781
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| || || |||||||| || || ||||| |||||||||||||| ||||| ||
Sbjct 30780 AGGGTGCGACCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGG 30721
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || ||||| || || ||||| ||| | ||||| || ||||| ||
Sbjct 30720 ATGCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCAATGGTGTCTGAAGATTCGACC 30661
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| ||||| || || || || | ||| || ||||| ||||||||
Sbjct 30660 TCGAGCGTAATCGTCTTGCCTGTCAGAGTCTTGACGAAGATTTGCAT 30614
Score = 116 bits (128), Expect = 4e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|| ||||| ||||| |||||||| ||||||||||| |||| | |||| | ||| ||
Sbjct 31050 ACAAGGTGAAGCGTAGATTCCTTCTGAATGTTGTAATCGCTCAAGGTGCGGCCGTCTTCC 30991
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
| || ||||| || ||||| | ||||||||| || || || ||||| || || || |||
Sbjct 30990 AATTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGA 30931
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || || || ||| | |||||||| || || || || | || || || ||
Sbjct 30930 ATCTTGGACTTCACGTTGTCAATCGTGTCGGAAGACTCGACTTCTAACGTGATTGTCTTT 30871
Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || || || ||||| || |||||
Sbjct 30870 CCGGTCAATGTCTTGACGAAGATCTGCAT 30842
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | || | ||| ||||| || ||||| |||||||||||||||
Sbjct 30612 CCGCCACGGAGACGGAGAACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCGGAC 30553
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| || ||| || || || ||||| || || || | ||||||||| || || ||
Sbjct 30552 AGAGTGCGACCGTCCTCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGA 30493
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || || ||||| || || || ||| | || || || || || ||
Sbjct 30492 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACATTGTCGATGGTATCAGAAGACTCAACC 30433
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
|| || || ||||| || ||||| | || || ||||
Sbjct 30432 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 30396
>seq57
Length=484889
Score = 118 bits (130), Expect = 1e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| || ||||| || ||||| ||||| || ||||||||||| | |||| |
Sbjct 315916 AGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGG 315857
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| |||||||| || || || || |||| |||||||| ||||| || ||||| ||
Sbjct 315856 CCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 315797
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || ||||| ||| | ||||||||||| ||||| || || ||
Sbjct 315796 TTATCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTG 315737
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || || || | || || ||||| || |||||
Sbjct 315736 ATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 315699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505396372088920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |