Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq35 96.9 3e-15
>seq35
Length=490854
Score = 96.9 bits (106), Expect = 3e-15
Identities = 273/418 (65%), Gaps = 11/418 (3%)
Strand=Plus/Minus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
||||| ||| | || |||||||| | | ||||| | || |||||||| ||||| ||
Sbjct 455870 CCCAAGATTATCAACGGTCCTGAGGTTCTCAATAAGTTCGTCGGTCAATCCGAAGAGAAC 455811
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTC 19547
| ||| |||| || || |||||| ||| | | || | |||| | | | |||
Sbjct 455810 ATCCGAAAGATGTTCGCCGATGCTGAA-AAGGAGTACAAGGAGAAGGGTGACCAGAGTGG 455752
Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGT-- 19605
| | || ||||| || | ||||| |||| || |||| ||||||||||| ||||||
Sbjct 455751 TCTTCATATTATCATTTTCGATGAGCTGGATGCCGTCTGCAAGCAAAGAGGCTCTGGTGC 455692
Query 19606 -------GTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658
| | ||| || ||||| ||||||||| || || || | || | |||||
Sbjct 455691 TGGAGGCGGCACTGGTGTTGGTGACAGTGTTGTCAACCAGCTTCTCACCAAGCTCGACGG 455632
Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA 19718
|||| |||| || || || || | | || || ||||| ||| | || | || ||
Sbjct 455631 TGTTGACCAGCTCAACAACATCCTGCTCATCGGTATGACCAATCGTAAAGACATGATCGA 455572
Query 19719 CAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGA 19778
|| | || || |||||||| |||||| | | | || || | ||| ||| | ||
Sbjct 455571 TGAGGCGCTTTTGCGTCCCGGTCGTTTGGAAGTTCAATTGGAGATCAGCTTGCCCAACGA 455512
Query 19779 ATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTT 19836
| ||||| |||||| || | || || || | | ||||| | |||||| ||
Sbjct 455511 AGAGGGACGCAAGGAAATCTTCATGATTCACACTGCCAAGATGCGGGACAATAACATT 455454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397454445077605
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |