Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq35 96.9 3e-15 >seq35 Length=490854 Score = 96.9 bits (106), Expect = 3e-15 Identities = 273/418 (65%), Gaps = 11/418 (3%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| ||| | || |||||||| | | ||||| | || |||||||| ||||| || Sbjct 455870 CCCAAGATTATCAACGGTCCTGAGGTTCTCAATAAGTTCGTCGGTCAATCCGAAGAGAAC 455811 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTC 19547 | ||| |||| || || |||||| ||| | | || | |||| | | | ||| Sbjct 455810 ATCCGAAAGATGTTCGCCGATGCTGAA-AAGGAGTACAAGGAGAAGGGTGACCAGAGTGG 455752 Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGT-- 19605 | | || ||||| || | ||||| |||| || |||| ||||||||||| |||||| Sbjct 455751 TCTTCATATTATCATTTTCGATGAGCTGGATGCCGTCTGCAAGCAAAGAGGCTCTGGTGC 455692 Query 19606 -------GTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658 | | ||| || ||||| ||||||||| || || || | || | ||||| Sbjct 455691 TGGAGGCGGCACTGGTGTTGGTGACAGTGTTGTCAACCAGCTTCTCACCAAGCTCGACGG 455632 Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA 19718 |||| |||| || || || || | | || || ||||| ||| | || | || || Sbjct 455631 TGTTGACCAGCTCAACAACATCCTGCTCATCGGTATGACCAATCGTAAAGACATGATCGA 455572 Query 19719 CAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGA 19778 || | || || |||||||| |||||| | | | || || | ||| ||| | || Sbjct 455571 TGAGGCGCTTTTGCGTCCCGGTCGTTTGGAAGTTCAATTGGAGATCAGCTTGCCCAACGA 455512 Query 19779 ATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTT 19836 | ||||| |||||| || | || || || | | ||||| | |||||| || Sbjct 455511 AGAGGGACGCAAGGAAATCTTCATGATTCACACTGCCAAGATGCGGGACAATAACATT 455454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454445077605