Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq49 93.3 1e-13 seq179 89.7 2e-12 >seq49 Length=112291 Score = 93.3 bits (102), Expect = 1e-13 Identities = 212/315 (67%), Gaps = 8/315 (3%) Strand=Plus/Minus Query 254978 ATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAA 255037 || || ||| | ||||| ||||| ||| ||||||||||||||||||||| || || Sbjct 51036 ATCCCCATGCTTCGTGTCTTCAATAACACGGCTCGCTACGTCGATCAAGGTGGTAATAAG 50977 Query 255038 CGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGAACGGTTT 255094 || || || || ||| |||| ||||| ||||| ||||||||||| | |||| ||| Sbjct 50976 CGTCCTGGTGCCTTCGCCATTTACCTTGAGCCCTGGCACGCCGATGTCTTTGA---GTTC 50920 Query 255095 TTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCT 255154 | ||| | | || ||||| |||||| | || |||||| | | | || Sbjct 50919 ATGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCTCGCGACCTTTTCCTTGCC 50860 Query 255155 GTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGGAGCCTCAT 255213 ||||| | |||||| || ||| | || || | || ||| ||||| |||||| Sbjct 50859 CTCTGGATCCCCGATCTATTCATGAAGAGAGTCGAGAAGA-ACGCTGACTGGACCCTCAT 50801 Query 255214 GTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTA 255273 ||||||||| | |||||||| | |||| | || || ||||| || |||| Sbjct 50800 GTGTCCCAATGAGTGCCCCGGTCTGGCTGACTGCTACGGCGAGGAGTTCGAGGCCTTGTA 50741 Query 255274 TCTGGAGTACGAGCG 255288 | |||||||||| Sbjct 50740 CGAGAAGTACGAGCG 50726 >seq179 Length=397792 Score = 89.7 bits (98), Expect = 2e-12 Identities = 120/166 (72%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||||| | |||| || || || || || | || || || | || || ||||| || | Sbjct 380812 CTTCGCCCAGCGTCTGGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGT-GCGT 380870 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | |||||||| |||||| | || |||||||| || |||| ||||||||||| |||| Sbjct 380871 TCGCCTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACG 380930 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 | || ||| ||| |||||||| |||| ||||| ||||| || Sbjct 380931 AGCTCATCTCTCGCGACGAGGGCCTGCACACTGACTTTGCCTGCCT 380976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588329467471845