Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq49 93.3 1e-13
seq179 89.7 2e-12
>seq49
Length=112291
Score = 93.3 bits (102), Expect = 1e-13
Identities = 212/315 (67%), Gaps = 8/315 (3%)
Strand=Plus/Minus
Query 254978 ATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAA 255037
|| || ||| | ||||| ||||| ||| ||||||||||||||||||||| || ||
Sbjct 51036 ATCCCCATGCTTCGTGTCTTCAATAACACGGCTCGCTACGTCGATCAAGGTGGTAATAAG 50977
Query 255038 CGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGAACGGTTT 255094
|| || || || ||| |||| ||||| ||||| ||||||||||| | |||| |||
Sbjct 50976 CGTCCTGGTGCCTTCGCCATTTACCTTGAGCCCTGGCACGCCGATGTCTTTGA---GTTC 50920
Query 255095 TTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCT 255154
| ||| | | || ||||| |||||| | || |||||| | | | ||
Sbjct 50919 ATGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCTCGCGACCTTTTCCTTGCC 50860
Query 255155 GTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGGAGCCTCAT 255213
||||| | |||||| || ||| | || || | || ||| ||||| ||||||
Sbjct 50859 CTCTGGATCCCCGATCTATTCATGAAGAGAGTCGAGAAGA-ACGCTGACTGGACCCTCAT 50801
Query 255214 GTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTA 255273
||||||||| | |||||||| | |||| | || || ||||| || ||||
Sbjct 50800 GTGTCCCAATGAGTGCCCCGGTCTGGCTGACTGCTACGGCGAGGAGTTCGAGGCCTTGTA 50741
Query 255274 TCTGGAGTACGAGCG 255288
| ||||||||||
Sbjct 50740 CGAGAAGTACGAGCG 50726
>seq179
Length=397792
Score = 89.7 bits (98), Expect = 2e-12
Identities = 120/166 (72%), Gaps = 1/166 (1%)
Strand=Plus/Plus
Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758
||||| | |||| || || || || || | || || || | || || ||||| || |
Sbjct 380812 CTTCGCCCAGCGTCTGGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGT-GCGT 380870
Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818
| |||||||| |||||| | || |||||||| || |||| ||||||||||| ||||
Sbjct 380871 TCGCCTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACG 380930
Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864
| || ||| ||| |||||||| |||| ||||| ||||| ||
Sbjct 380931 AGCTCATCTCTCGCGACGAGGGCCTGCACACTGACTTTGCCTGCCT 380976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588329467471845
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |