Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq49 179 5e-40
seq179 100 4e-16
>seq49
Length=112291
Score = 179 bits (198), Expect = 5e-40
Identities = 614/938 (65%), Gaps = 33/938 (4%)
Strand=Plus/Plus
Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289
|||||||||| || ||||| ||||| ||||| |||||| | |||||| |
Sbjct 50498 GGAAGGGCGAGAGAAGCCAAGTTGCAGACAGCGACCTCATCAGGGGCGCAGTACTCAATG 50557
Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349
|| || || || | |||||| || || || || | ||||| ||||| ||||| |
Sbjct 50558 ATCTCAGTGCAGAGGTTGGAGCTGCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGG 50617
Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409
|| ||||||||||| |||||| | || | || ||||| ||||| | | ||||||
Sbjct 50618 TTTGCGGCATCCTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGAGCCTCGAGAATT 50677
Query 111410 GCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTA 111465
|| | ||||| | || | | || | |||| ||| | || | |||||| ||||||
Sbjct 50678 GCGTACCAAAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTGCCCTCCCGCTCGTA 50733
Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTC 111525
||| ||| | ||| || |||||||| || ||| | ||||| || || |
Sbjct 50734 CTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGACCGGGGCACTCATT 50793
Query 111526 TGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAAT 111585
||||| | || | ||| | | | | ||| || | ||||||||| || || || ||
Sbjct 50794 GGGACACATGAGGGTCCAGTCAGCGTTCTTCTCGACTCTCTTCATGAATAGATCGGGGAT 50853
Query 111586 CCACAGGG-ATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643
||| |||| | | ||| || || | | ||| || |||| || | || ||||| ||
Sbjct 50854 CCAGAGGGCAAGGAAA-AGGTCGCGAGCACGGA-CCTCCTCCTTGCCGTGGTTCTTGCGC 50911
Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703
| || | |||||| | || ||| |||||||| |||||||| || | |||| | ||
Sbjct 50912 AGATCCATGAACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACC- 50970
Query 111704 TTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGC 111757
||||| ||| |||||| || ||||| || ||| || || || ||||||
Sbjct 50971 --AGGACGCTTATTACCACCTTGATCGACGTAGCGAGCCGTGTTATTGAAGACACGAAGC 51028
Query 111758 ATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTC 111817
|| || || | || | || || || || || |||| || | |||| |
Sbjct 51029 ATGGGGATGACTCCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGG 51088
Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877
| ||| || | ||||| || || ||| ||| ||||| || || | |
Sbjct 51089 ATGCGGTGGGCGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAGGTCTTG 51148
Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937
|| || | |||||||| | || ||||| ||||| || ||| ||||||||| |||
Sbjct 51149 AGCGTGTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCAAGAAGAC 51208
Query 111938 ATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996
| ||| | || || ||||| || |||||||| || || | ||||| ||| | | |
Sbjct 51209 AGCTG-GCACTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGA--AGAAC 51265
Query 111997 TTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 112054
||| ||||||| || ||| ||||| | ||| |||| || || || |||||||
Sbjct 51266 TTGCTGGACATCAAGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCAGATGCCG 51325
Query 112055 ATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA 112114
| ||| || ||||||| ||||| ||| || | || | |||| |||||| ||||
Sbjct 51326 ACTGCAACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGC--TTGA 51383
Query 112115 --AGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149
|| || | || |||| ||||| |||| || |||||
Sbjct 51384 GTAGGTATGATC-TCTCCAGGGTCTTGAAGCCGAAGTA 51420
>seq179
Length=397792
Score = 100 bits (110), Expect = 4e-16
Identities = 151/210 (72%), Gaps = 6/210 (3%)
Strand=Plus/Minus
Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717
|||||| || ||| || ||||| || || || || || || || |||||| |||||
Sbjct 380971 GGCAAAGTCAGTGTGCAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 380912
Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777
||||||||||| |||||||| | ||| |||| | | ||| | ||| |||||||||
Sbjct 380911 AGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAGGCGAACGCACCGCTGAAGAAGAT 380852
Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC--- 122834
|||||| ||| || || |||| || || | ||||||||| ||| || | | ||
Sbjct 380851 ACCCTCAACAGCGGCGAAGGCAACCAGACGCTGGGCGAAGGA-TGAG-CTCT-CGTCGCT 380795
Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTT 122864
| |||||||| ||||| | ||||||||
Sbjct 380794 GATCCATTTCAAGGCCCAGTCGGCCTTCTT 380765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628029480021600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |