Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq49 179 5e-40 seq179 100 4e-16 >seq49 Length=112291 Score = 179 bits (198), Expect = 5e-40 Identities = 614/938 (65%), Gaps = 33/938 (4%) Strand=Plus/Plus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 |||||||||| || ||||| ||||| ||||| |||||| | |||||| | Sbjct 50498 GGAAGGGCGAGAGAAGCCAAGTTGCAGACAGCGACCTCATCAGGGGCGCAGTACTCAATG 50557 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | |||||| || || || || | ||||| ||||| ||||| | Sbjct 50558 ATCTCAGTGCAGAGGTTGGAGCTGCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGG 50617 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 || ||||||||||| |||||| | || | || ||||| ||||| | | |||||| Sbjct 50618 TTTGCGGCATCCTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGAGCCTCGAGAATT 50677 Query 111410 GCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTA 111465 || | ||||| | || | | || | |||| ||| | || | |||||| |||||| Sbjct 50678 GCGTACCAAAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTGCCCTCCCGCTCGTA 50733 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTC 111525 ||| ||| | ||| || |||||||| || ||| | ||||| || || | Sbjct 50734 CTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGACCGGGGCACTCATT 50793 Query 111526 TGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAAT 111585 ||||| | || | ||| | | | | ||| || | ||||||||| || || || || Sbjct 50794 GGGACACATGAGGGTCCAGTCAGCGTTCTTCTCGACTCTCTTCATGAATAGATCGGGGAT 50853 Query 111586 CCACAGGG-ATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643 ||| |||| | | ||| || || | | ||| || |||| || | || ||||| || Sbjct 50854 CCAGAGGGCAAGGAAA-AGGTCGCGAGCACGGA-CCTCCTCCTTGCCGTGGTTCTTGCGC 50911 Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703 | || | |||||| | || ||| |||||||| |||||||| || | |||| | || Sbjct 50912 AGATCCATGAACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACC- 50970 Query 111704 TTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGC 111757 ||||| ||| |||||| || ||||| || ||| || || || |||||| Sbjct 50971 --AGGACGCTTATTACCACCTTGATCGACGTAGCGAGCCGTGTTATTGAAGACACGAAGC 51028 Query 111758 ATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTC 111817 || || || | || | || || || || || |||| || | |||| | Sbjct 51029 ATGGGGATGACTCCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGG 51088 Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 | ||| || | ||||| || || ||| ||| ||||| || || | | Sbjct 51089 ATGCGGTGGGCGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAGGTCTTG 51148 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || | |||||||| | || ||||| ||||| || ||| ||||||||| ||| Sbjct 51149 AGCGTGTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCAAGAAGAC 51208 Query 111938 ATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996 | ||| | || || ||||| || |||||||| || || | ||||| ||| | | | Sbjct 51209 AGCTG-GCACTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGA--AGAAC 51265 Query 111997 TTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 112054 ||| ||||||| || ||| ||||| | ||| |||| || || || ||||||| Sbjct 51266 TTGCTGGACATCAAGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCAGATGCCG 51325 Query 112055 ATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA 112114 | ||| || ||||||| ||||| ||| || | || | |||| |||||| |||| Sbjct 51326 ACTGCAACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGC--TTGA 51383 Query 112115 --AGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 || || | || |||| ||||| |||| || ||||| Sbjct 51384 GTAGGTATGATC-TCTCCAGGGTCTTGAAGCCGAAGTA 51420 >seq179 Length=397792 Score = 100 bits (110), Expect = 4e-16 Identities = 151/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| || ||||| || || || || || || || |||||| ||||| Sbjct 380971 GGCAAAGTCAGTGTGCAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 380912 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | ||| |||| | | ||| | ||| ||||||||| Sbjct 380911 AGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAGGCGAACGCACCGCTGAAGAAGAT 380852 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC--- 122834 |||||| ||| || || |||| || || | ||||||||| ||| || | | || Sbjct 380851 ACCCTCAACAGCGGCGAAGGCAACCAGACGCTGGGCGAAGGA-TGAG-CTCT-CGTCGCT 380795 Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTT 122864 | |||||||| ||||| | |||||||| Sbjct 380794 GATCCATTTCAAGGCCCAGTCGGCCTTCTT 380765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029480021600