Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq49 172 7e-38 seq179 125 9e-24 seq290 100 4e-16 >seq49 Length=112291 Score = 172 bits (190), Expect = 7e-38 Identities = 1082/1723 (63%), Gaps = 49/1723 (3%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||||||||| || |||| | || ||||||||||| ||||||||||| | Sbjct 49599 TGAACTGAATGGGGGCCGAAGCTGCCTGGGTACGCAGGTAGTACATGCCCGTCTTGAGAC 49658 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 | |||||||| || | ||||| || | ||| | ||| ||| | |||| Sbjct 49659 CAAGCTTCCAGCCAGCAAAGTGCATGCTGGTAATTTTGCCCATGGTAGGATCCTTCATGT 49718 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || ||| | || || || ||||||||| || || || || ||||| | || Sbjct 49719 GGATGTTGAGGGACTGTGACTGGTCGATGAAGGCACCGCGGTCGGCAGCCATCTG---CA 49775 Query 117985 CATCCTTCATCTTG---ATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGA 118041 || | | || | |||||||| || ||| |||| || ||| | || | || | Sbjct 49776 CAACGGTACGCTGGGAGATTTCCCAGACGGTCTTGTACAGAGCCTTTACCTCGGCAGGAA 49835 Query 118042 TATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGA---TCCTTCATATCCT 118098 | | ||| || |||| ||| ||| || | | |||| | | |||||| | | Sbjct 49836 TGTTGGGGATGTTCTGGACGGA---ACCGTTCTCGGCGATGATACGGTTCTTCATGGCAT 49892 Query 118099 TTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACT 118158 ||||| | || || | |||||| | || || ||||| || |||| Sbjct 49893 CAGACCACAAGCCCATGTCGACGAGATCTTTCAACAGCCAGGGGTTGACGACTTGGAACT 49952 Query 118159 CACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGT 118218 | || || || || | | | || || |||| ||| || || || |||||||| |||| Sbjct 49953 CTCCAGCAAGAACACGACGCTGGTAAATGTTGGACGTATAGGGTTCGAAGCACTCGTTGT 50012 Query 118219 TACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGA 118278 | ||||| || || | |||||||| || |||||||| || | ||| || ||||| |||| Sbjct 50013 TGCCCAAAATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACGAGCAGACTGTTGCGGA 50072 Query 118279 GACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTA--GTTGAGCTTTGTCTC 118336 ||| | ||| | || | ||||| |||| |||||| || | | | || | || Sbjct 50073 CACCATGCTCCTTGATCTGCTCCTTCAGAGAGTCCCAATCCCAAAGGTCAGAG--GGCTT 50130 Query 118337 CCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTC 118396 | | |||||| || |||||||||| || || || || || ||||| | || Sbjct 50131 GACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAATAGGAGAGCCCTCGTACGTGGA 50190 Query 118397 ATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG--AGGGCTGCGTGATACATT 118454 || | || || ||| ||||| | || | | | | || || || || || || Sbjct 50191 GTAGGTACCTTCCTCCTTGGCCAACT--GAACCGACATAGTCAGAGCAGCATGGTAAATG 50248 Query 118455 GTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCAC 118514 || ||||| || || | | |||||| || || || | | || Sbjct 50249 GTCTCAAAGATCTTCTTGTTGAGGTCACGGGCCTCAGGAGATTCGAATGGCATGCGAAGG 50308 Query 118515 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 118574 | || |||| || ||||| |||||||| || || || || || || | ||| || Sbjct 50309 GCGAGGAAAGCATCGGCAAGACCCTGGACACCAAGACCGATGGGACGGTGACGCATGTTG 50368 Query 118575 GACTTCCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 118631 || || || ||| ||||| || || ||| || | | | || | || Sbjct 50369 CTATTGCGGGC---CTCAGGAACGGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTG 50425 Query 118632 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA 118691 ||| |||| |||| ||||||||||| | | | || | | | ||| | Sbjct 50426 CGAACGACGACCTGAGTGACCTCATGAAGCTTCTGGAAGTCGTA---GACACCCTCGTTG 50482 Query 118692 TTGACAT---ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 118748 | | || | |||||||||||| || |||| || || |||| | |||||| Sbjct 50483 TAGTCAACGAAAGTAGGAAGGGCGAGAGAAGCCAAGTTGCAGACAGCGACCTCATCAGGG 50542 Query 118749 TCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTT 118808 | |||||| || || || ||||| | ||| || || |||||||| | |||||| Sbjct 50543 GCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATGGTGCCGAGGTTCTTC 50602 Query 118809 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 118868 || || ||| ||| |||||||||||||||||| | || | || ||||| || Sbjct 50603 TGGTTGCTCTTGCGGTTTGCGGCATCCTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTC 50662 Query 118869 TGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGC-- 118925 || | || |||||| || | ||| | | || | || | ||| ||| | | Sbjct 50663 TGAGCCTCGAGAATTGCGTACCAAAGCTTCTGGGCCTTGA----TGGTCTTGCGACCCTT 50718 Query 118926 -CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAG 118984 ||||| ||||||||| ||| | ||| || ||||| || || | || | || Sbjct 50719 GCCCTCCCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAG 50778 Query 118985 CCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 119044 || || || || || || | ||| | ||| | | | || ||| || | |||||| Sbjct 50779 ACCGGGGCACTCATTGGGACACATGAGGGTCCAGTCAGCGTTCTTCTCGACTCTCTTCAT 50838 Query 119045 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC 119104 ||| || || ||||||||||| || ||| || || ||| || | || || | || Sbjct 50839 GAATAGATCGGGGATCCAGAGGGCAAGGAAAAGGTCGCGAGCACGGACCTCCTCCTTGCC 50898 Query 119105 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 119164 || || |||| |||| || || | || ||| |||||||| || || ||||| | Sbjct 50899 GTGGTTCTTGCGCAGATCCATGAACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAAT 50958 Query 119165 CGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAA 119221 |||| | || ||| | |||| | || | || || | || ||| || || Sbjct 50959 GGCGAAGGCACCAGGACGCTTATTACCACCTTGATCGACGTAGCGAGCCGTGTTATTGAA 51018 Query 119222 TACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTT 119281 ||||||||||| || |||| || | || ||| || || || |||| || Sbjct 51019 GACACGAAGCATGGGGATGACTCCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCC 51078 Query 119282 ATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGC 119341 | |||| | || |||| || | |||||| || || ||| ||| ||||| || Sbjct 51079 AGTGGCACGGATGCGGTGGGCGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGC 51138 Query 119342 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAA 119401 ||| | |||| || ||||||| || || || ||||| |||| | ||| |||||| Sbjct 51139 GCAGGTCTTGAGCGTGTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAA 51198 Query 119402 GCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGA 119460 ||| |||| || | ||| || ||||| ||||||||||| || || | |||||| Sbjct 51199 GCAAGAAGACAGCTG-GCACTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGG 51257 Query 119461 TGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACG 119501 ||| | | |||| ||||||| || ||||||||| | |||| Sbjct 51258 TGA--AGAACTTGCTGGACATCAAGTTGTAGGTCTCGATGACG 51298 >seq179 Length=397792 Score = 125 bits (138), Expect = 9e-24 Identities = 303/453 (67%), Gaps = 8/453 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| ||||||||||||||||| ||||| ||| | | | || |||||||| Sbjct 381258 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGCCGAGGGAAATGTTCTCCATG 381199 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846 ||||| || ||||| || || | | || | | |||| | |||||| Sbjct 381198 AAATCGAAGGGGTTGGAAGACTTGTAGACCT-TGTCGTTGCCAAGAGCGACCAAGAGACG 381140 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | ||| |||||||||||| |||| | ||||||||| |||| ||| || Sbjct 381139 GTCAGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAGCGCA 381080 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || | |||| ||| |||||| | || || || | |||| | | Sbjct 381079 AGGCAGAGCCTCAGTCAAGAACTCCTGCTCAATCTTGACCGCATCGACAATGATGTCCTC 381020 Query 129967 AATGGTCTCCGTGCCAGGTCTAT---TGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 ||| || | || || | | || | || | || || || |||||| || Sbjct 381019 AATAACCTGCTTGTTGGGGCGGTGCTTGAGGTGAGAGTACAATAGG--CA-GGCAAAGTC 380963 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| || |||||||| || |||||||| || || |||||| |||||| |||||||| Sbjct 380962 AGTGTGCAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGAG 380903 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | ||||||||| | || | || ||||||||| ||||| || Sbjct 380902 ACCACGCTTCTTGAGCCAGAAAATGGAGGCGAACGCACCGCTGAAGAAGATACCCTCAAC 380843 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 | ||||| |||| ||||||| || ||||| Sbjct 380842 AGCGGCGAAGGCAACCAGACGCTGGGCGAAGGA 380810 >seq290 Length=261601 Score = 100 bits (110), Expect = 4e-16 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 14236 ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC 14295 ||||| ||| || ||||| || ||||||| ||| || || | | | ||| ||| | | Sbjct 140352 ACCGATGGCATCGATTTCGTCAATGAAAATGATGCAGGGGGCACTCTTACGAGCATTTGC 140411 Query 14296 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG--CG 14353 ||| | ||||||||||| | ||||||||||||||||||||| || || | || | Sbjct 140412 AAACAAGTCTCGCACTCTTGAAGGACCGACACCCACAAACATCTCAACGAACTCGGAACC 140471 Query 14354 GCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 14413 || || | || ||||| || ||| || || ||| |||| ||| || |||||| Sbjct 140472 GCTGACGCT--GAAAAAGGGCACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAGGGTC 140529 Query 14414 TTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 || || || ||||| || || || | |||||||| |||||| | || || Sbjct 140530 TTACCGGTTCCTGGAGGTCCGGCCAGGATAGCACCACGAGGGATCTTTGCGCC 140582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432718528760