Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq49 215 6e-51
seq179 129 7e-25
>seq49
Length=112291
Score = 215 bits (238), Expect = 6e-51
Identities = 898/1401 (64%), Gaps = 47/1401 (3%)
Strand=Plus/Minus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| ||||||| || || |||| || || || || |||| |||
Sbjct 51354 CCGCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGACAACGTTGAGCGCGTC 51295
Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339
| ||||| ||| || ||||||| |||| | | ||| ||||| | || || ||||
Sbjct 51294 ATCGAGACCTACAACTTGATGTCCAGCAAGTTCT--TCACCCACGCCTCTCCCACACTCT 51237
Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399
|||| || ||||| || ||| |||| ||||||||| ||| || ||||| |
Sbjct 51236 TCAACGCCGGTACCCCTCAGTGCCAGCTGTCTTCTTGCTTCCTCGTCGACATGAAGGAAG 51177
Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459
|||| || | |||||||| | || || | | || || ||||| ||| ||| |
Sbjct 51176 ACTCCATTGAGGGTATCTACGACACGCTCAAGACCTGCGCCATGATCTCCAAGATGGCCG 51117
Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519
| || ||||| | || ||| | | |||| | || |||| || || |
Sbjct 51116 GTGGCATTGGTCTCAACGCCCACCGCATCCGTGCCACTGGCTCCTATATTGCCGGCACCA 51057
Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579
| || || | || | || || |||||||| || || || ||| || ||||| |
Sbjct 51056 ACGGCACCTCGAACGGAGTCATCCCCATGCTTCGTGTCTTCAATAACACGGCTCGCTACG 50997
Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633
| |||||| ||| ||||| || | |||| | || |||||||| ||||
Sbjct 50996 TCGATCAAGGTGGTAATAAGCGTCCT---GGTGCCTTCGCCATTTACCTTGAGCCCTGGC 50940
Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693
|||| ||| || | |||||| | || |||| ||||| || | ||||||| || |
Sbjct 50939 ACGCCGATGTCTTTGAGTTCATGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTCCG-T 50881
Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752
|| ||||| || ||| || |||||||| || ||||| |||||||||||||| ||| ||
Sbjct 50880 GCTCGCGACCTTTTCCTTGCCCTCTGGATCCCCGATCTATTCATGAAGAGAGTCGAGAAG 50821
Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812
| | | ||| | ||| | ||||| | || || ||||| | || | ||
Sbjct 50820 AACGCTGACTGGACCCTCATGTGTCCCAATGAGTGCCCCGGTCTGGCTGACTGCTACGGC 50761
Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAG---GAAG---AAGGTCGGGCGACTGCG 104866
|||||||| || ||| | ||| ||||||||| || | | ||||| |||
Sbjct 50760 GAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGGGAGGGCAAGGGTCGCAAGACCATC 50701
Query 104867 ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926
| || |||| || | ||| | || |||||| || |||| || |||||||| |
Sbjct 50700 AAGGC-CCAGAAGC-----TTTGGTACGCAATTCTCGAGGCTCAGACTGAGACTGGCAAC 50647
Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986
|| | |||||||||||| || ||| |||| ||||| || || ||||| | ||
Sbjct 50646 CCTTTCATGCTTTACAAGGATGCCGCAAACCGCAAGAGCAACCAGAAGAACCTCGGCACC 50587
Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046
||| || ||||| ||||| || || ||| | || | | | |||||| |||
Sbjct 50586 ATCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCCCCTGATGAGGTCGCT 50527
Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATT 105105
|| || ||| | || || |||| || || | | || || | || || | | |
Sbjct 50526 GTCTGCAACTTGGCTTCTCTCGCCCTTCCTACTTTCGTTGACTACAACGAGGGTGTC-TA 50468
Query 105106 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTAT 105165
|| | | || || || || || || | ||| ||| | |||| | ||
Sbjct 50467 CGACTTCCAGAAGCTTCATGAGGTCACTCAGGTCGTCGTTCGCAACTTGAACAAGATCAT 50408
Query 105166 TGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222
|||| || ||||||||| ||| || || || || ||| | ||||||||
Sbjct 50407 TGATGTCAACCACTACCCCGTTCCTGAG---GCCCGCAATAGCAACATGCGTCACCGTCC 50351
Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGA 105282
|| ||||| ||||| |||||||| || |||| ||| | |||| |||| ||
Sbjct 50350 CATCGGTCTTGGTGTCCAGGGTCTTGCCGATGCTTTCCTCGCCCTTCGCATGCCATTCGA 50291
Query 105283 TTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342
|| || || || |||| | || ||||||||||| || || || |||||
Sbjct 50290 ATCTCCTGAGGCCCGTGACCTCAACAAGAAGATCTTTGAGACCATTTACCATGCTGCTCT 50231
Query 105343 ---TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399
| | || |||| ||||||| ||| || ||| | || || | ||||| ||
Sbjct 50230 GACTATGTCG-GTTC--AGTTGGCCAAGGAGGAAGGTACCTACTCCACGTACGAGGGCTC 50174
Query 105400 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC---AAGCTTCA 105456
||| ||| || || | || || | || |||||| | | || || | |||
Sbjct 50173 TCCTATTTCTCAGGGCATCCTCCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTT-- 50116
Query 105457 CTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516
| || ||||| |||| ||||| | ||||||||| | ||| | || |||||||| ||
Sbjct 50115 -TGGGATTGGGACTCTCTGAAGGAGCAGATCAAGGAGCATGGTGTCCGCAACAGTCTGCT 50057
Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 105576
| | ||||| ||||| || |||||||| | || || ||||| || || || ||||| ||
Sbjct 50056 CGTTGCTCCCATGCCTACTGCCTCCACTTCGCAGATTTTGGGCAACAACGAGTGCTTCGA 49997
Query 105577 ACCCTACACGACGAACATCTA 105597
|||||| ||| | ||||| ||
Sbjct 49996 ACCCTATACGTCCAACATTTA 49976
>seq179
Length=397792
Score = 129 bits (142), Expect = 7e-25
Identities = 125/161 (78%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854
||||| || |||| || | || || || ||||||||||||||||||| ||| |
Sbjct 380810 TCCTTCGCCCAGCGTCTGGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCG 380869
Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914
||| | | |||| |||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 380870 TTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAAC 380929
Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||| |||||||| |||||||| || ||| || |||||
Sbjct 380930 GAGCTCATCTCTCGCGACGAGGGCCTGCACACTGACTTTGC 380970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583258459666040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |