Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq49 215 6e-51 seq179 129 7e-25 >seq49 Length=112291 Score = 215 bits (238), Expect = 6e-51 Identities = 898/1401 (64%), Gaps = 47/1401 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || |||| || || || || |||| ||| Sbjct 51354 CCGCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGACAACGTTGAGCGCGTC 51295 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||| ||| || ||||||| |||| | | ||| ||||| | || || |||| Sbjct 51294 ATCGAGACCTACAACTTGATGTCCAGCAAGTTCT--TCACCCACGCCTCTCCCACACTCT 51237 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || ||||| || ||| |||| ||||||||| ||| || ||||| | Sbjct 51236 TCAACGCCGGTACCCCTCAGTGCCAGCTGTCTTCTTGCTTCCTCGTCGACATGAAGGAAG 51177 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 |||| || | |||||||| | || || | | || || ||||| ||| ||| | Sbjct 51176 ACTCCATTGAGGGTATCTACGACACGCTCAAGACCTGCGCCATGATCTCCAAGATGGCCG 51117 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | || ||||| | || ||| | | |||| | || |||| || || | Sbjct 51116 GTGGCATTGGTCTCAACGCCCACCGCATCCGTGCCACTGGCTCCTATATTGCCGGCACCA 51057 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || | || | || || |||||||| || || || ||| || ||||| | Sbjct 51056 ACGGCACCTCGAACGGAGTCATCCCCATGCTTCGTGTCTTCAATAACACGGCTCGCTACG 50997 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | |||||| ||| ||||| || | |||| | || |||||||| |||| Sbjct 50996 TCGATCAAGGTGGTAATAAGCGTCCT---GGTGCCTTCGCCATTTACCTTGAGCCCTGGC 50940 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| || | |||||| | || |||| ||||| || | ||||||| || | Sbjct 50939 ACGCCGATGTCTTTGAGTTCATGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTCCG-T 50881 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || ||||| || ||| || |||||||| || ||||| |||||||||||||| ||| || Sbjct 50880 GCTCGCGACCTTTTCCTTGCCCTCTGGATCCCCGATCTATTCATGAAGAGAGTCGAGAAG 50821 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 | | | ||| | ||| | ||||| | || || ||||| | || | || Sbjct 50820 AACGCTGACTGGACCCTCATGTGTCCCAATGAGTGCCCCGGTCTGGCTGACTGCTACGGC 50761 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAG---GAAG---AAGGTCGGGCGACTGCG 104866 |||||||| || ||| | ||| ||||||||| || | | ||||| ||| Sbjct 50760 GAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGGGAGGGCAAGGGTCGCAAGACCATC 50701 Query 104867 ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 | || |||| || | ||| | || |||||| || |||| || |||||||| | Sbjct 50700 AAGGC-CCAGAAGC-----TTTGGTACGCAATTCTCGAGGCTCAGACTGAGACTGGCAAC 50647 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | |||||||||||| || ||| |||| ||||| || || ||||| | || Sbjct 50646 CCTTTCATGCTTTACAAGGATGCCGCAAACCGCAAGAGCAACCAGAAGAACCTCGGCACC 50587 Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046 ||| || ||||| ||||| || || ||| | || | | | |||||| ||| Sbjct 50586 ATCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCCCCTGATGAGGTCGCT 50527 Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATT 105105 || || ||| | || || |||| || || | | || || | || || | | | Sbjct 50526 GTCTGCAACTTGGCTTCTCTCGCCCTTCCTACTTTCGTTGACTACAACGAGGGTGTC-TA 50468 Query 105106 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTAT 105165 || | | || || || || || || | ||| ||| | |||| | || Sbjct 50467 CGACTTCCAGAAGCTTCATGAGGTCACTCAGGTCGTCGTTCGCAACTTGAACAAGATCAT 50408 Query 105166 TGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222 |||| || ||||||||| ||| || || || || ||| | |||||||| Sbjct 50407 TGATGTCAACCACTACCCCGTTCCTGAG---GCCCGCAATAGCAACATGCGTCACCGTCC 50351 Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGA 105282 || ||||| ||||| |||||||| || |||| ||| | |||| |||| || Sbjct 50350 CATCGGTCTTGGTGTCCAGGGTCTTGCCGATGCTTTCCTCGCCCTTCGCATGCCATTCGA 50291 Query 105283 TTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342 || || || || |||| | || ||||||||||| || || || ||||| Sbjct 50290 ATCTCCTGAGGCCCGTGACCTCAACAAGAAGATCTTTGAGACCATTTACCATGCTGCTCT 50231 Query 105343 ---TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 105399 | | || |||| ||||||| ||| || ||| | || || | ||||| || Sbjct 50230 GACTATGTCG-GTTC--AGTTGGCCAAGGAGGAAGGTACCTACTCCACGTACGAGGGCTC 50174 Query 105400 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC---AAGCTTCA 105456 ||| ||| || || | || || | || |||||| | | || || | ||| Sbjct 50173 TCCTATTTCTCAGGGCATCCTCCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTT-- 50116 Query 105457 CTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516 | || ||||| |||| ||||| | ||||||||| | ||| | || |||||||| || Sbjct 50115 -TGGGATTGGGACTCTCTGAAGGAGCAGATCAAGGAGCATGGTGTCCGCAACAGTCTGCT 50057 Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 105576 | | ||||| ||||| || |||||||| | || || ||||| || || || ||||| || Sbjct 50056 CGTTGCTCCCATGCCTACTGCCTCCACTTCGCAGATTTTGGGCAACAACGAGTGCTTCGA 49997 Query 105577 ACCCTACACGACGAACATCTA 105597 |||||| ||| | ||||| || Sbjct 49996 ACCCTATACGTCCAACATTTA 49976 >seq179 Length=397792 Score = 129 bits (142), Expect = 7e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || |||| || | || || || ||||||||||||||||||| ||| | Sbjct 380810 TCCTTCGCCCAGCGTCTGGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCG 380869 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 ||| | | |||| |||||||||||||| ||||||||||| ||||| |||||||||| Sbjct 380870 TTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAAC 380929 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| |||||||| |||||||| || ||| || ||||| Sbjct 380930 GAGCTCATCTCTCGCGACGAGGGCCTGCACACTGACTTTGC 380970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258459666040