Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq6 140 1e-27 seq57 111 5e-19 >seq6 Length=179136 Score = 140 bits (154), Expect = 1e-27 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| || | || ||||| ||||| ||||| || || ||||| || ||||| Sbjct 31068 CCACCACGCAAGCGGAGGACAAGGTGAAGCGTAGATTCCTTCTGAATGTTGTAATCGCTC 31009 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 || || || || ||||| | ||| || ||||| || || ||||| ||||| ||||| || Sbjct 31008 AAGGTGCGGCCGTCTTCCAATTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGGTGGG 30949 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || |||||||| || | || || || ||||||| || || | || ||| Sbjct 30948 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCAATCGTGTCGGAAGACTCGACT 30889 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || | || | |||||||||||| | ||| || || || |||||||| Sbjct 30888 TCTAACGTGATTGTCTTTCCGGTCAATGTCTTGACGAAGATCTGCAT 30842 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || ||||| || |||||||| || ||||| |||||||| Sbjct 30844 CATACCACCGCGGAGGCGAAGGACGAGATGCAGGGTAGACTCCTTCTGAATGTTATAATC 30785 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || |||||||||||||| | ||| ||||| || || Sbjct 30784 CGACAGGGTGCGACCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCGGG 30725 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || || || || || | || ||||| ||||| | || || | ||| Sbjct 30724 AGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCAATGGTGTCTGAAGATTC 30665 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || |||| ||||| || || || || || || || || ||||| Sbjct 30664 GACCTCGAGCGTAATCGTCTTGCCTGTCAGAGTCTTGACGAAGATTTGCAT 30614 Score = 134 bits (148), Expect = 4e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | ||||| |||||||| || |||||||| || || Sbjct 30332 CATACCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATATTGTAGTC 30273 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || || ||||| || || ||||| ||||| ||||| || || || || Sbjct 30272 GGAAAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGTTGGTCTGG 30213 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || ||||| || |||||||| || | || || || ||||| | ||| || | ||| Sbjct 30212 GGGGATGCCTTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCGGAGGATTC 30153 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 || ||||| || | ||||| ||||| Sbjct 30152 GACCTCAAGAGTGATGGTCTTGCCGGT 30126 >seq57 Length=484889 Score = 111 bits (122), Expect = 5e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 315929 CATACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 315870 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || |||||||| ||||| || || ||||| || || Sbjct 315869 TGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGG 315810 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || |||||||| || || | || ||||| || || | || || | || Sbjct 315809 GGGGATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTC 315750 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || || |||||||| Sbjct 315749 CACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 315699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515248168042763