Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq49 253 2e-62 seq299 122 1e-22 >seq49 Length=112291 Score = 253 bits (280), Expect = 2e-62 Identities = 523/768 (68%), Gaps = 20/768 (3%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || || | || ||| |||||| || ||| ||| ||||| ||| Sbjct 51341 TCATGCGTGTTGCAGTCGGCATCTGGGGTGACAACGTTGAGCGCGTCATCGAGACCTACA 51282 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 |||| ||| | |||| ||| || |||||| | || || || |||||||| ||||| Sbjct 51281 ACTTGATGTCCAGCAAGTTCTTCACCCACGCCTCTCCCACACTCTTCAACGCCGGTACCC 51222 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||| ||| |||| |||||||| || | |||||||| ||||| || || || | Sbjct 51221 CTCAGTGCCAGCTGTCTTCTTGCTTCCTCGTCGACATGAAGGAAGACTCCATTGAGGGTA 51162 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| ||||||||| || ||| ||||||||| | | ||||| || ||| || Sbjct 51161 TCTACGACACGCTCAAGACCTGCGCCATGATCTCCAAGATGGCCGGTGGCATTGGTCTCA 51102 Query 53433 ACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || || | | || ||||||| | ||| | || || || |||||| | | | Sbjct 51101 AC-GCCC-ACCGCATCCGTGCCACTGGCTCCTATATTGCCGGCACCAACGGCACCTCGAA 51044 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 ||| || | || ||||| || |||||||| |||||||| || |||||| | || ||||| Sbjct 51043 CGGAGTCATCCCCATGCTTCGTGTCTTCAATAACACGGCTCGCTACGTCGATCAAGGTGG 50984 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 | ||||| || | |||||||| ||||| ||||| ||||||||||| | | || Sbjct 50983 TAATAAGCGTCCTGGTGCCTTCGCCATTTACCTTGAGCCCTGGCACGCCGATGTCTTTGA 50924 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTA 53669 ||| | || ||||| ||| || || | || ||| | || ||| || ||||| || Sbjct 50923 GTTCATGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTCCG-TGCTCGCGACCTTTTCC 50865 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 || || ||||| || || || |||||| | | || |||||| ||| || ||| || Sbjct 50864 TTGCCCTCTGGATCCCCGATCTATTCATGAAGAGAGTCGAGAAGAACGCTGACTGGACCC 50805 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGAG 53788 | ||||| || || ||||||||||| || | | || |||||| |||||||| | | Sbjct 50804 TCATGTGTCCCAATGAGTGCCCCGGTCTGGCTGACTG-CTACGGCGAGGAGTTCGAGGCC 50746 Query 53789 ATGTATCGGACGTAC-----GCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCGCGT 53842 |||| || |||| | || | |||| ||| |||| ||||||| | Sbjct 50745 TTGTACGAGAAGTACGAGCGGGAGGGCAAGGGTCGC------AAGACCATCAAGGCCCAG 50692 Query 53843 GAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTAC 53902 || | ||| | ||||| ||| || ||| ||||| || | || | |||| ||| Sbjct 50691 AAGCTTTGGTACGCAATTCTCGAGGCTCAGACTGAGACTGGCAACCCTTTCATGCTTTAC 50632 Query 53903 AAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950 |||||| | | ||| |||||||||||||||||| ||||| |||| Sbjct 50631 AAGGATGCCGCAAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATC 50584 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 ||| || || ||||| | |||||||||||| ||||| || |||||| |||| || |||| Sbjct 49765 TGCCGACCGCGGTGCCTTCATCGACCAGTCACAGTCCCTCAACATCCACATGAAGGATCC 49706 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | | ||| ||| | | | ||||||||| || |||||| || ||||||||||| Sbjct 49705 TACCATGGGCAAAATTACCAGCATGCACTTTGCTGGCTGGAAGCTTGGTCTCAAGACGGG 49646 Query 55906 TATGTACTATCTGCGGACCC 55925 |||||||| ||||| |||| Sbjct 49645 CATGTACTACCTGCGTACCC 49626 >seq299 Length=236298 Score = 122 bits (134), Expect = 1e-22 Identities = 183/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094 ||||| || | |||||| |||||| ||||| || || || | ||||| | ||| ||| Sbjct 79876 ATGTAACGCGGGCTGGCAGCATCCGAACCACCGGCAAGTCGAGAACCAAAGTTTCCGGAG 79935 Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154 ||||| || ||||| |||||| | ||||| || |||| || | | | || || Sbjct 79936 GGCTCCAGACAGTTGATGTTGTTTGAACCCACAAAGGTCTGCGCTAGACCAATGATGGTC 79995 Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214 ||| ||| | ||||||||||||| || | ||||||||| | |||||| || ||||| Sbjct 79996 TGCTGAAGAGACACTTCACCGTGGTGGTAGGACGTCTGCTCAGAGATGTAACCGGCCAAT 80055 Query 152215 TGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGC 152274 | | |||||| |||| | || |||| |||||| |||||| | || || ||||| Sbjct 80056 TCAACGACCTTCTGGTCCTTGACCAAGTTCCTCTTGAAACAGGCAAACATGACTTTGCGT 80115 Query 152275 TGGGATGGTTTCAAACCGTC 152294 || || ||||| || || Sbjct 80116 TGACCAGGCTTCAATCCATC 80135 Score = 104 bits (114), Expect = 3e-17 Identities = 227/334 (68%), Gaps = 6/334 (2%) Strand=Plus/Plus Query 118013 AGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCGTAC 118072 || ||||||||||| |||||||| ||||| ||||| ||||||||||| | | ||||| Sbjct 80626 AGACCCTTGATATGAGAACCGTCGTGATCCTGATCGGCCATGATCATCAAGTGACCGTAT 80685 Query 118073 CGTAAATCTCTCAGGG--AGTTATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAA 118130 || | | |||| | | || | ||| || || | ||| ||||||| || || | Sbjct 80686 CGCAGA-CTCTTGGTGTCAG-TGTAAGTCTGCTTGTGCTTGAGACCGAGGAACTGCTTGA 80743 Query 118131 GGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCG 118190 ||| || |||| | || | ||| | ||| | || | || || || ||||| || Sbjct 80744 TGTTCTGAATTTCCGCGTTCTTCGTAATCTGGTCGATCGATGCATCTCGTACGTTCAGCA 80803 Query 118191 GCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAA-CGCTCAAGCCGGCA 118249 |||||| || || ||||| || || | |||| || ||| || ||| | | |||||| Sbjct 80804 TCTTACCACGAAGGGGAAAGACTCCGATGCGGTCAGGGTCCAGAATCGCACGA-CCGGCA 80862 Query 118250 ATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTGCGA 118309 | ||| | ||| || |||||||| || || | ||| || || ||||| || | Sbjct 80863 ACAGCCAAACTCTTGGCAGAGTCACCTTCCGTGAGAATGAGCGTACACTCATGGCCATGG 80922 Query 118310 TGAGTACCGGCCCAATTAGCATCATCCAGCTTCG 118343 |||| || ||| | || |||||| | || |||| Sbjct 80923 CGAGTGCCAGCCAAGTTGGCATCAACTAGTTTCG 80956 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 119074 ACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTC 119133 |||||| ||||| |||||||||||||| ||||| ||||||||| | || ||| Sbjct 81762 ACTGAAGACGTTACAAAGCTTGGCACCGTAACCGTTGCGACCACCGACCGTCTTCTTCTC 81821 Query 119134 CTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 ||||||| ||||||||| | |||| ||||| || ||||| | ||||||||| Sbjct 81822 GTCGTCGTCGTAGTTGGAACCAGTCAGGAGGTGACCGAAGATCATCTCGGGGAT 81875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213804295800