Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq49 253 2e-62
seq299 122 1e-22
>seq49
Length=112291
Score = 253 bits (280), Expect = 2e-62
Identities = 523/768 (68%), Gaps = 20/768 (3%)
Strand=Plus/Minus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| || || | || ||| |||||| || ||| ||| ||||| |||
Sbjct 51341 TCATGCGTGTTGCAGTCGGCATCTGGGGTGACAACGTTGAGCGCGTCATCGAGACCTACA 51282
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|||| ||| | |||| ||| || |||||| | || || || |||||||| |||||
Sbjct 51281 ACTTGATGTCCAGCAAGTTCTTCACCCACGCCTCTCCCACACTCTTCAACGCCGGTACCC 51222
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
||| ||| |||| |||||||| || | |||||||| ||||| || || || |
Sbjct 51221 CTCAGTGCCAGCTGTCTTCTTGCTTCCTCGTCGACATGAAGGAAGACTCCATTGAGGGTA 51162
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
||||||| ||||||||| || ||| ||||||||| | | ||||| || ||| ||
Sbjct 51161 TCTACGACACGCTCAAGACCTGCGCCATGATCTCCAAGATGGCCGGTGGCATTGGTCTCA 51102
Query 53433 ACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
|| || | | || ||||||| | ||| | || || || |||||| | | |
Sbjct 51101 AC-GCCC-ACCGCATCCGTGCCACTGGCTCCTATATTGCCGGCACCAACGGCACCTCGAA 51044
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
||| || | || ||||| || |||||||| |||||||| || |||||| | || |||||
Sbjct 51043 CGGAGTCATCCCCATGCTTCGTGTCTTCAATAACACGGCTCGCTACGTCGATCAAGGTGG 50984
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
| ||||| || | |||||||| ||||| ||||| ||||||||||| | | ||
Sbjct 50983 TAATAAGCGTCCTGGTGCCTTCGCCATTTACCTTGAGCCCTGGCACGCCGATGTCTTTGA 50924
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTA 53669
||| | || ||||| ||| || || | || ||| | || ||| || ||||| ||
Sbjct 50923 GTTCATGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTCCG-TGCTCGCGACCTTTTCC 50865
Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729
|| || ||||| || || || |||||| | | || |||||| ||| || ||| ||
Sbjct 50864 TTGCCCTCTGGATCCCCGATCTATTCATGAAGAGAGTCGAGAAGAACGCTGACTGGACCC 50805
Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGAG 53788
| ||||| || || ||||||||||| || | | || |||||| |||||||| | |
Sbjct 50804 TCATGTGTCCCAATGAGTGCCCCGGTCTGGCTGACTG-CTACGGCGAGGAGTTCGAGGCC 50746
Query 53789 ATGTATCGGACGTAC-----GCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCGCGT 53842
|||| || |||| | || | |||| ||| |||| ||||||| |
Sbjct 50745 TTGTACGAGAAGTACGAGCGGGAGGGCAAGGGTCGC------AAGACCATCAAGGCCCAG 50692
Query 53843 GAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTAC 53902
|| | ||| | ||||| ||| || ||| ||||| || | || | |||| |||
Sbjct 50691 AAGCTTTGGTACGCAATTCTCGAGGCTCAGACTGAGACTGGCAACCCTTTCATGCTTTAC 50632
Query 53903 AAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950
|||||| | | ||| |||||||||||||||||| ||||| ||||
Sbjct 50631 AAGGATGCCGCAAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATC 50584
Score = 100 bits (110), Expect = 3e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845
||| || || ||||| | |||||||||||| ||||| || |||||| |||| || ||||
Sbjct 49765 TGCCGACCGCGGTGCCTTCATCGACCAGTCACAGTCCCTCAACATCCACATGAAGGATCC 49706
Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905
| | ||| ||| | | | ||||||||| || |||||| || |||||||||||
Sbjct 49705 TACCATGGGCAAAATTACCAGCATGCACTTTGCTGGCTGGAAGCTTGGTCTCAAGACGGG 49646
Query 55906 TATGTACTATCTGCGGACCC 55925
|||||||| ||||| ||||
Sbjct 49645 CATGTACTACCTGCGTACCC 49626
>seq299
Length=236298
Score = 122 bits (134), Expect = 1e-22
Identities = 183/260 (70%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094
||||| || | |||||| |||||| ||||| || || || | ||||| | ||| |||
Sbjct 79876 ATGTAACGCGGGCTGGCAGCATCCGAACCACCGGCAAGTCGAGAACCAAAGTTTCCGGAG 79935
Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154
||||| || ||||| |||||| | ||||| || |||| || | | | || ||
Sbjct 79936 GGCTCCAGACAGTTGATGTTGTTTGAACCCACAAAGGTCTGCGCTAGACCAATGATGGTC 79995
Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214
||| ||| | ||||||||||||| || | ||||||||| | |||||| || |||||
Sbjct 79996 TGCTGAAGAGACACTTCACCGTGGTGGTAGGACGTCTGCTCAGAGATGTAACCGGCCAAT 80055
Query 152215 TGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGC 152274
| | |||||| |||| | || |||| |||||| |||||| | || || |||||
Sbjct 80056 TCAACGACCTTCTGGTCCTTGACCAAGTTCCTCTTGAAACAGGCAAACATGACTTTGCGT 80115
Query 152275 TGGGATGGTTTCAAACCGTC 152294
|| || ||||| || ||
Sbjct 80116 TGACCAGGCTTCAATCCATC 80135
Score = 104 bits (114), Expect = 3e-17
Identities = 227/334 (68%), Gaps = 6/334 (2%)
Strand=Plus/Plus
Query 118013 AGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCGTAC 118072
|| ||||||||||| |||||||| ||||| ||||| ||||||||||| | | |||||
Sbjct 80626 AGACCCTTGATATGAGAACCGTCGTGATCCTGATCGGCCATGATCATCAAGTGACCGTAT 80685
Query 118073 CGTAAATCTCTCAGGG--AGTTATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAA 118130
|| | | |||| | | || | ||| || || | ||| ||||||| || || |
Sbjct 80686 CGCAGA-CTCTTGGTGTCAG-TGTAAGTCTGCTTGTGCTTGAGACCGAGGAACTGCTTGA 80743
Query 118131 GGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCG 118190
||| || |||| | || | ||| | ||| | || | || || || ||||| ||
Sbjct 80744 TGTTCTGAATTTCCGCGTTCTTCGTAATCTGGTCGATCGATGCATCTCGTACGTTCAGCA 80803
Query 118191 GCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCACAA-CGCTCAAGCCGGCA 118249
|||||| || || ||||| || || | |||| || ||| || ||| | | ||||||
Sbjct 80804 TCTTACCACGAAGGGGAAAGACTCCGATGCGGTCAGGGTCCAGAATCGCACGA-CCGGCA 80862
Query 118250 ATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTGCGA 118309
| ||| | ||| || |||||||| || || | ||| || || ||||| || |
Sbjct 80863 ACAGCCAAACTCTTGGCAGAGTCACCTTCCGTGAGAATGAGCGTACACTCATGGCCATGG 80922
Query 118310 TGAGTACCGGCCCAATTAGCATCATCCAGCTTCG 118343
|||| || ||| | || |||||| | || ||||
Sbjct 80923 CGAGTGCCAGCCAAGTTGGCATCAACTAGTTTCG 80956
Score = 89.7 bits (98), Expect = 6e-13
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 119074 ACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTC 119133
|||||| ||||| |||||||||||||| ||||| ||||||||| | || |||
Sbjct 81762 ACTGAAGACGTTACAAAGCTTGGCACCGTAACCGTTGCGACCACCGACCGTCTTCTTCTC 81821
Query 119134 CTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187
||||||| ||||||||| | |||| ||||| || ||||| | |||||||||
Sbjct 81822 GTCGTCGTCGTAGTTGGAACCAGTCAGGAGGTGACCGAAGATCATCTCGGGGAT 81875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547213804295800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |