Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq49 244 1e-59 seq6 179 4e-40 seq57 172 6e-38 seq259 105 8e-18 seq179 95.1 1e-14 >seq49 Length=112291 Score = 244 bits (270), Expect = 1e-59 Identities = 805/1238 (65%), Gaps = 35/1238 (3%) Strand=Plus/Plus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 ||||||||||| ||| | |||||||| || ||||| ||| || |||| ||| | Sbjct 50137 CCACATGTCGTACTGGAGGATGCCCTGAGAAATAGGAGAGCCCTCGTACGTGGAGTAGGT 50196 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660 || ||| |||||||| || | |||| | || || || || |||||| |||||| Sbjct 50197 ACCTTCCTCCTTGGCCAACTGAACCGACATAGTCAGAGCAGCATGGTAAATGGTCTCAAA 50256 Query 80661 GACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAA 80720 || |||||| | | || |||| || ||||| | || || | | ||| Sbjct 50257 GATCTTCTTGTTGAGGTCACGGGCCTCAGGAGATTCGAATGGCATGCGAAGGGCGAGGAA 50316 Query 80721 CACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCT 80779 | || || || ||||| || || | |||| || ||||| ||| |||| | || || Sbjct 50317 AGCATCGGCAAGACCCTGGACACCAAGACCGATGGGACGGTGACGCATGTTGCTATTGCG 50376 Query 80780 CGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAA 80839 |||||| |||| ||||| ||| ||| |||| ||||| |||||| || | Sbjct 50377 -GGCCTCAGGAACGGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACGACGA 50435 Query 80840 CCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATG 80893 || | || || |||||||| ||||| |||||| | | ||| | || || | Sbjct 50436 CCTGAGTGACCTCATGAAGCTTCTGGAAGTCGTAGACACCCTCGTTGTAGTCAACGAAAG 50495 Query 80894 CCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGA 80953 |||||| || || |||| ||||| || || ||||| |||| | |||| | Sbjct 50496 TAGGAAGGGCGAGAGAAGCCAAGTTGCAGACAGCGACCTCATCAGGGGCGCAGTACTCAA 50555 Query 80954 CGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGG 81013 ||| || ||||| | || || || || || ||||| |||||||| |||| Sbjct 50556 TGATCTCAGTGCAGAGGTTGGAGCTGCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGC 50615 Query 81014 CGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGA 81073 ||| || |||||||| |||| | ||| | || ||||| ||| | || ||| | Sbjct 50616 GGTTTGCGGCATCCTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGAGCCTCGAGAA 50675 Query 81074 TGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACT 81133 | |||| ||||| || | ||||||| |||||| ||||| || | | |||| Sbjct 50676 TTGCGTACCAAAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCCCGCTCGTACT 50735 Query 81134 TGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTA 81192 | |||| | ||||||| | |||| | ||| ||| || | |||||||| || Sbjct 50736 TCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGT-CAGCCAGACCGGGGCACTCATTG 50794 Query 81193 GGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATC 81252 || ||||| ||| |||||| | || ||||| || ||||||||| || |||||| Sbjct 50795 GGACACATGAGGGTCCAGTCAGCGTTCTTCTCGACTCTCTTCATGAATAGATCGGGGATC 50854 Query 81253 CAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAA 81311 |||||||| ||| |||||||| ||| || ||||||| | || ||||| ||||| Sbjct 50855 CAGAGGGCAAGGAAAAGGTCGCGAGCA-CGGACCTCCTCCTTGCCGTGGTTCTTGCGCAG 50913 Query 81312 CTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTT 81371 || | || || | || || || ||||| ||||| || || | ||||| | || Sbjct 50914 ATCCATGAACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGG 50973 Query 81372 GCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGG 81428 || | ||||| || | |||||| || || || || || ||||| | ||| || Sbjct 50974 ACGCTTATTACCACCTTGATCGACGTAGCGAGCCGTGTTATTGAAGACACGAAGCATGGG 51033 Query 81429 GATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CC 81486 ||||| || | || ||||| || || | ||| || || |||| || | | Sbjct 51034 GATGACTCCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCG 51093 Query 81487 TTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATG 81546 || ||| ||||| |||||||| | | ||| || ||| || || || | Sbjct 51094 GTGGGCGTTG--AGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAGGTCTTGAGC 51151 Query 81547 GTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTC-------AAGCAAGAA-ACAGC 81598 || || || || ||||| ||| |||| |||||||| ||||||||| ||||| Sbjct 51152 GTGTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCAAGAAGACAGC 51211 Query 81599 TTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAAT 81658 || || ||||||| | ||||| ||||| ||||| || | ||||| |||| Sbjct 51212 -TGGCA-CTGAGGG------GTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGAAGA 51263 Query 81659 AACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATAC 81718 | | | ||||||| || ||||| || ||||||| || | |||||| || | Sbjct 51264 ACTTGCTGGACATCAAGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCAGATGC 51323 Query 81719 CGATAGCTACACGCATAAACATGTACTGGGGCGTCTCG 81756 ||| || |||||||| | ||||| ||| || ||||| Sbjct 51324 CGACTGCAACACGCATGATCATGTGCTGCGGTCTCTCG 51361 >seq6 Length=179136 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || |||||||| ||||| || ||||| || || Sbjct 30614 ATGCAAATCTTCGTCAAGACTCTGACAGGCAAGACGATTACGCTCGAGGTCGAATCTTCA 30673 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||| | || || || ||||||||||| || ||||| |||||| Sbjct 30674 GACACCATTGACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAG 30733 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || |||||||| ||||| |||||||||| ||| ||||| | || ||||| Sbjct 30734 CAGCGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGTCGCACCCTGTCGGATTATAAC 30793 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || ||||| ||| | || || |||||||| Sbjct 30794 ATTCAGAAGGAGTCTACCCTGCATCTCGTCCTTCGCCTCCGCGGTGG 30840 Score = 163 bits (180), Expect = 3e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || ||||||||||| || || |||||||||||||| ||||| ||| | Sbjct 30398 GTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCGAC 30457 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| ||||| | || ||||||||||||||||| ||||| || |||||||||||||| || Sbjct 30458 AATGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTCTTATC 30517 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || |||||||| ||||| | ||| || || | ||||| || | || ||||| Sbjct 30518 TTCGCCGGCAAGCAACTTGAGGACGGTCGCACTCTGTCCGACTACAACATTCAGAAGGAG 30577 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || | || | ||||| || || || Sbjct 30578 TCTACGCTCCACTTGGTTCTCCGTCTCCGTGGCGG 30612 Score = 136 bits (150), Expect = 5e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || ||||||||||| || || |||| |||| || | ||| | Sbjct 30126 ACCGGCAAGACCATCACTCTTGAGGTCGAATCCTCCGATACTATTGACAACGTCAAGTCC 30185 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || |||||||||||||| || || || |||||||| |||||||| || || ||||| ||| Sbjct 30186 AAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAACAGCGTCTTATCTTCGCTGGCAAG 30245 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||| | || ||||| | ||||| ||| | || ||||| || || ||||| Sbjct 30246 CAGCTTGAGGACGGCCGAACCCTTTCCGACTACAATATTCAGAAGGAGTCTACCCTTCAC 30305 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || | || ||||| ||||| Sbjct 30306 TTGGTTCTCCGCCTTCGTGGTGG 30328 Score = 134 bits (148), Expect = 2e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||| ||||| || || | || || ||||| Sbjct 30842 ATGCAGATCTTCGTCAAGACATTGACCGGAAAGACAATCACGTTAGAAGTCGAGTCTTCC 30901 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||| | || ||||||||||||||||| || || || |||||| Sbjct 30902 GACACGATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 30961 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| ||||| ||||| |||||| | || || | || ||| | ||| || || || Sbjct 30962 CAGCGTCTCATTTTCGCTGGCAAGCAATTGGAAGACGGCCGCACCTTGAGC-GATTACAA 31020 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || |||||||| || ||||| || ||| | || | || ||||| || Sbjct 31021 CATTCAGAAGGAATCTACGCTTCACCTTGTCCTCCGCTTGCGTGGTGGCCA 31071 >seq57 Length=484889 Score = 172 bits (190), Expect = 6e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| || || ||||||||||| || |||||||| ||||| Sbjct 315696 ATCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCG 315755 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | ||| | || || ||||| |||||||| || || || ||| Sbjct 315756 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGAC 315815 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || ||||| ||||| |||||||| | || ||||| ||||||| Sbjct 315816 CAGCAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCAGACTAC 315875 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||||| || || || ||| |||| || || ||||| Sbjct 315876 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 315925 >seq259 Length=323629 Score = 105 bits (116), Expect = 8e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || || ||||| ||||| |||||||| ||||| || | || Sbjct 46239 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 46298 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| ||||| || ||||| ||||| | Sbjct 46299 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCTTG 46358 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||| ||||| || ||||| | || ||||| | || || || |||| ||| Sbjct 46359 ATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCCGATTACAACATCCAGAAG 46418 Query 27595 G 27595 | Sbjct 46419 G 46419 >seq179 Length=397792 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 64714 CAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCT 64773 |||||||| | || || ||| ||| || || || ||||| || | ||| || Sbjct 380819 CAGCGTCTGGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCGTTCGCCTCC 380878 Query 64774 ATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 ||||||||||| || ||||| || || ||||| |||||| | || || |||||||| ||| Sbjct 380879 ATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATC 380938 Query 64834 TCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865 ||||| |||||||| || ||| || ||||| Sbjct 380939 TCTCGCGACGAGGGCCTGCACACTGACTTTGC 380970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308111629520