Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq49 244 1e-59
seq6 179 4e-40
seq57 172 6e-38
seq259 105 8e-18
seq179 95.1 1e-14
>seq49
Length=112291
Score = 244 bits (270), Expect = 1e-59
Identities = 805/1238 (65%), Gaps = 35/1238 (3%)
Strand=Plus/Plus
Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600
||||||||||| ||| | |||||||| || ||||| ||| || |||| ||| |
Sbjct 50137 CCACATGTCGTACTGGAGGATGCCCTGAGAAATAGGAGAGCCCTCGTACGTGGAGTAGGT 50196
Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660
|| ||| |||||||| || | |||| | || || || || |||||| ||||||
Sbjct 50197 ACCTTCCTCCTTGGCCAACTGAACCGACATAGTCAGAGCAGCATGGTAAATGGTCTCAAA 50256
Query 80661 GACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAA 80720
|| |||||| | | || |||| || ||||| | || || | | |||
Sbjct 50257 GATCTTCTTGTTGAGGTCACGGGCCTCAGGAGATTCGAATGGCATGCGAAGGGCGAGGAA 50316
Query 80721 CACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCT 80779
| || || || ||||| || || | |||| || ||||| ||| |||| | || ||
Sbjct 50317 AGCATCGGCAAGACCCTGGACACCAAGACCGATGGGACGGTGACGCATGTTGCTATTGCG 50376
Query 80780 CGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAA 80839
|||||| |||| ||||| ||| ||| |||| ||||| |||||| || |
Sbjct 50377 -GGCCTCAGGAACGGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACGACGA 50435
Query 80840 CCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATG 80893
|| | || || |||||||| ||||| |||||| | | ||| | || || |
Sbjct 50436 CCTGAGTGACCTCATGAAGCTTCTGGAAGTCGTAGACACCCTCGTTGTAGTCAACGAAAG 50495
Query 80894 CCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGA 80953
|||||| || || |||| ||||| || || ||||| |||| | |||| |
Sbjct 50496 TAGGAAGGGCGAGAGAAGCCAAGTTGCAGACAGCGACCTCATCAGGGGCGCAGTACTCAA 50555
Query 80954 CGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGG 81013
||| || ||||| | || || || || || ||||| |||||||| ||||
Sbjct 50556 TGATCTCAGTGCAGAGGTTGGAGCTGCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGC 50615
Query 81014 CGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGA 81073
||| || |||||||| |||| | ||| | || ||||| ||| | || ||| |
Sbjct 50616 GGTTTGCGGCATCCTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGAGCCTCGAGAA 50675
Query 81074 TGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACT 81133
| |||| ||||| || | ||||||| |||||| ||||| || | | ||||
Sbjct 50676 TTGCGTACCAAAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCCCGCTCGTACT 50735
Query 81134 TGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTA 81192
| |||| | ||||||| | |||| | ||| ||| || | |||||||| ||
Sbjct 50736 TCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGT-CAGCCAGACCGGGGCACTCATTG 50794
Query 81193 GGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATC 81252
|| ||||| ||| |||||| | || ||||| || ||||||||| || ||||||
Sbjct 50795 GGACACATGAGGGTCCAGTCAGCGTTCTTCTCGACTCTCTTCATGAATAGATCGGGGATC 50854
Query 81253 CAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAA 81311
|||||||| ||| |||||||| ||| || ||||||| | || ||||| |||||
Sbjct 50855 CAGAGGGCAAGGAAAAGGTCGCGAGCA-CGGACCTCCTCCTTGCCGTGGTTCTTGCGCAG 50913
Query 81312 CTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTT 81371
|| | || || | || || || ||||| ||||| || || | ||||| | ||
Sbjct 50914 ATCCATGAACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGG 50973
Query 81372 GCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGG 81428
|| | ||||| || | |||||| || || || || || ||||| | ||| ||
Sbjct 50974 ACGCTTATTACCACCTTGATCGACGTAGCGAGCCGTGTTATTGAAGACACGAAGCATGGG 51033
Query 81429 GATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CC 81486
||||| || | || ||||| || || | ||| || || |||| || | |
Sbjct 51034 GATGACTCCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCG 51093
Query 81487 TTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATG 81546
|| ||| ||||| |||||||| | | ||| || ||| || || || |
Sbjct 51094 GTGGGCGTTG--AGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAGGTCTTGAGC 51151
Query 81547 GTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTC-------AAGCAAGAA-ACAGC 81598
|| || || || ||||| ||| |||| |||||||| ||||||||| |||||
Sbjct 51152 GTGTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCAAGAAGACAGC 51211
Query 81599 TTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAAT 81658
|| || ||||||| | ||||| ||||| ||||| || | ||||| ||||
Sbjct 51212 -TGGCA-CTGAGGG------GTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGAAGA 51263
Query 81659 AACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATAC 81718
| | | ||||||| || ||||| || ||||||| || | |||||| || |
Sbjct 51264 ACTTGCTGGACATCAAGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCAGATGC 51323
Query 81719 CGATAGCTACACGCATAAACATGTACTGGGGCGTCTCG 81756
||| || |||||||| | ||||| ||| || |||||
Sbjct 51324 CGACTGCAACACGCATGATCATGTGCTGCGGTCTCTCG 51361
>seq6
Length=179136
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| || || |||||||| ||||| || ||||| || ||
Sbjct 30614 ATGCAAATCTTCGTCAAGACTCTGACAGGCAAGACGATTACGCTCGAGGTCGAATCTTCA 30673
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | ||| | || || || ||||||||||| || ||||| ||||||
Sbjct 30674 GACACCATTGACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAG 30733
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | || |||||||| ||||| |||||||||| ||| ||||| | || |||||
Sbjct 30734 CAGCGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGTCGCACCCTGTCGGATTATAAC 30793
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| || || || ||||| ||| | || || ||||||||
Sbjct 30794 ATTCAGAAGGAGTCTACCCTGCATCTCGTCCTTCGCCTCCGCGGTGG 30840
Score = 163 bits (180), Expect = 3e-35
Identities = 165/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || ||||||||||| || || |||||||||||||| ||||| ||| |
Sbjct 30398 GTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCGAC 30457
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| ||||| | || ||||||||||||||||| ||||| || |||||||||||||| ||
Sbjct 30458 AATGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTCTTATC 30517
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|| || || |||||||| ||||| | ||| || || | ||||| || | || |||||
Sbjct 30518 TTCGCCGGCAAGCAACTTGAGGACGGTCGCACTCTGTCCGACTACAACATTCAGAAGGAG 30577
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || || | || | ||||| || || ||
Sbjct 30578 TCTACGCTCCACTTGGTTCTCCGTCTCCGTGGCGG 30612
Score = 136 bits (150), Expect = 5e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || ||||||||||| || || |||| |||| || | ||| |
Sbjct 30126 ACCGGCAAGACCATCACTCTTGAGGTCGAATCCTCCGATACTATTGACAACGTCAAGTCC 30185
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| |||||||||||||| || || || |||||||| |||||||| || || ||||| |||
Sbjct 30186 AAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAACAGCGTCTTATCTTCGCTGGCAAG 30245
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| || ||||| | || ||||| | ||||| ||| | || ||||| || || |||||
Sbjct 30246 CAGCTTGAGGACGGCCGAACCCTTTCCGACTACAATATTCAGAAGGAGTCTACCCTTCAC 30305
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
| || | || ||||| |||||
Sbjct 30306 TTGGTTCTCCGCCTTCGTGGTGG 30328
Score = 134 bits (148), Expect = 2e-26
Identities = 170/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | ||||| ||||| || || | || || |||||
Sbjct 30842 ATGCAGATCTTCGTCAAGACATTGACCGGAAAGACAATCACGTTAGAAGTCGAGTCTTCC 30901
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || ||||| | || ||||||||||||||||| || || || ||||||
Sbjct 30902 GACACGATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 30961
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|||||||| ||||| ||||| |||||| | || || | || ||| | ||| || || ||
Sbjct 30962 CAGCGTCTCATTTTCGCTGGCAAGCAATTGGAAGACGGCCGCACCTTGAGC-GATTACAA 31020
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
| || |||||||| || ||||| || ||| | || | || ||||| ||
Sbjct 31021 CATTCAGAAGGAATCTACGCTTCACCTTGTCCTCCGCTTGCGTGGTGGCCA 31071
>seq57
Length=484889
Score = 172 bits (190), Expect = 6e-38
Identities = 176/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| ||||| |||||||| || || ||||||||||| || |||||||| |||||
Sbjct 315696 ATCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCG 315755
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||| | ||| | ||| | || || ||||| |||||||| || || || |||
Sbjct 315756 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGAC 315815
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
|||||||| || || || ||||| ||||| |||||||| | || ||||| |||||||
Sbjct 315816 CAGCAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCAGACTAC 315875
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| |||| ||||| ||||| || || || ||| |||| || || |||||
Sbjct 315876 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 315925
>seq259
Length=323629
Score = 105 bits (116), Expect = 8e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| || ||||| || || || ||||| ||||| |||||||| ||||| || | ||
Sbjct 46239 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 46298
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | || || |||||||||||||| ||||| || ||||| ||||| |
Sbjct 46299 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCTTG 46358
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| || ||||| ||||| || ||||| | || ||||| | || || || |||| |||
Sbjct 46359 ATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCCGATTACAACATCCAGAAG 46418
Query 27595 G 27595
|
Sbjct 46419 G 46419
>seq179
Length=397792
Score = 95.1 bits (104), Expect = 1e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 64714 CAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCT 64773
|||||||| | || || ||| ||| || || || ||||| || | ||| ||
Sbjct 380819 CAGCGTCTGGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCGTTCGCCTCC 380878
Query 64774 ATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833
||||||||||| || ||||| || || ||||| |||||| | || || |||||||| |||
Sbjct 380879 ATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATC 380938
Query 64834 TCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865
||||| |||||||| || ||| || |||||
Sbjct 380939 TCTCGCGACGAGGGCCTGCACACTGACTTTGC 380970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570308111629520
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