Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq57 152 1e-31 seq6 149 1e-30 seq259 134 3e-26 seq49 104 5e-17 >seq57 Length=484889 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||||| | || || Sbjct 315910 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCGTCC 315851 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| ||||| || ||||| || || | || ||||| ||| Sbjct 315850 TCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCC 315791 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || ||||| || ||||| ||| Sbjct 315790 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTC 315731 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 315730 TTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 315699 >seq6 Length=179136 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || || ||||| || || ||||||||||||| ||||| | ||||| Sbjct 30825 AGGACGAGATGCAGGGTAGACTCCTTCTGAATGTTATAATCCGACAGGGTGCGACCATCC 30766 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| | || || ||||| ||||| | || |||||||| Sbjct 30765 TCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCT 30706 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || |||||||| || ||| |||||||| || |||||| Sbjct 30705 TGGATCTTCGACTTGACATTGTCAATGGTGTCTGAAGATTCGACCTCGAGCGTAATCGTC 30646 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | ||||| Sbjct 30645 TTGCCTGTCAGAGTCTTGACGAAGATTTGCAT 30614 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| || ||||| || || || || || || | |||||| Sbjct 30323 ACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAAAGGGT 30264 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| ||||||||||| || |||||||| || || | || Sbjct 30263 TCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGTTGGTCTGGGGGGATGCC 30204 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||| ||||| || ||||| || || || || ||| ||| ||||| || Sbjct 30203 TTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCGGAGGATTCGACCTCAAG 30144 Query 211073 AGTGATCGTCTTTCCCGTGA 211092 |||||| ||||| || |||| Sbjct 30143 AGTGATGGTCTTGCCGGTGA 30124 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || || ||||| || || | || || | || || Sbjct 30597 AGAACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCGTCC 30538 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| ||||||||||| || || |||||||| |||| || ||||||||| Sbjct 30537 TCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 30478 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || |||||||| ||||| |||||||| || ||||| ||| Sbjct 30477 TGAATCTTCGACTTCACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTC 30418 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || || ||||| ||||| || Sbjct 30417 TTGCCGGTGAGGGTCTTGAC 30398 Score = 134 bits (148), Expect = 3e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 |||||||||||||| || || || || || ||||| ||||| | ||||| | | || || Sbjct 31053 AGGACAAGGTGAAGCGTAGATTCCTTCTGAATGTTGTAATCGCTCAAGG-TGCGGCCGTC 30995 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||||| |||||||| ||||| || || || || |||||||| || | || |||||||| Sbjct 30994 TTCCAATTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTC 30935 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||| ||||| |||||||| || || ||||| || || || || | ||||| || Sbjct 30934 CTGAATCTTGGACTTCACGTTGTCAATCGTGTCGGAAGACTCGACTTCTAACGTGATTGT 30875 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| || | ||||| || || | |||||| Sbjct 30874 CTTTCCGGTCAATGTCTTGACGAAGATCTGCAT 30842 >seq259 Length=323629 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| ||||| | ||||| | || || || ||||||||||| |||||||| Sbjct 46417 TTCTGGATGTTGTAATCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATC 46358 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||| |||||||| || |||| || ||||||||||||||||| || || || ||| Sbjct 46357 AAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 46298 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || ||||| || || || ||||| ||||| || ||||| || || Sbjct 46297 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 46239 >seq49 Length=112291 Score = 104 bits (114), Expect = 5e-17 Identities = 188/275 (68%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152 |||||| ||||||||||| | | |||||| ||||| ||||| || | || Sbjct 50596 GTTCTTCTGGTTGCTCTTGCGGTTTGCGGCATCCTTGTAAAGCATGAAAGGGTTGCCAGT 50655 Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212 ||||| |||||| ||||||| | |||||||| |||||| || ||||| | Sbjct 50656 CTCAGTCTGAGCCTCGAGAATTGCGTACCAAAGCTTCTGGGCCTTGATGGTCTTGCGACC 50715 Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272 || || || ||||||||| | ||| | ||||||| ||| || ||| ||| | Sbjct 50716 CTTGCCCTCCCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGC 50775 Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTT 178332 |||||||| ||||||||| || | ||| |||| | | ||| | || |||| || Sbjct 50776 CAGACCGGGGCACTCATTGGGACACATGAGGGTCCAGTCAGCGTTCTTCTCGACTCTCTT 50835 Query 178333 CATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 |||||| || || | | |||||| |||| ||||| Sbjct 50836 CATGAATAGATCGGGGATCCAGAGGGCAAGGAAAA 50870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159147232625165