Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq57 152 1e-31
seq6 149 1e-30
seq259 134 3e-26
seq49 104 5e-17
>seq57
Length=484889
Score = 152 bits (168), Expect = 1e-31
Identities = 161/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || |||||||| || |||||||| || || | ||||| | || ||
Sbjct 315910 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCGTCC 315851
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| ||||| || ||||| || || | || ||||| |||
Sbjct 315850 TCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCC 315791
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||||||||| || || ||||| || ||||| |||
Sbjct 315790 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTC 315731
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || ||||| || || | ||||||
Sbjct 315730 TTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 315699
>seq6
Length=179136
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || || || || ||||| || || ||||||||||||| ||||| | |||||
Sbjct 30825 AGGACGAGATGCAGGGTAGACTCCTTCTGAATGTTATAATCCGACAGGGTGCGACCATCC 30766
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || || ||||| | || || ||||| ||||| | || ||||||||
Sbjct 30765 TCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCT 30706
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || || |||||||| || ||| |||||||| || ||||||
Sbjct 30705 TGGATCTTCGACTTGACATTGTCAATGGTGTCTGAAGATTCGACCTCGAGCGTAATCGTC 30646
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || |||||||| || || | |||||
Sbjct 30645 TTGCCTGTCAGAGTCTTGACGAAGATTTGCAT 30614
Score = 145 bits (160), Expect = 2e-29
Identities = 152/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | |||||| || ||||| || || || || || || | ||||||
Sbjct 30323 ACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAAAGGGT 30264
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || ||||||||||| ||||||||||| || |||||||| || || | ||
Sbjct 30263 TCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGTTGGTCTGGGGGGATGCC 30204
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||||||| ||||| || ||||| || || || || ||| ||| ||||| ||
Sbjct 30203 TTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCGGAGGATTCGACCTCAAG 30144
Query 211073 AGTGATCGTCTTTCCCGTGA 211092
|||||| ||||| || ||||
Sbjct 30143 AGTGATGGTCTTGCCGGTGA 30124
Score = 140 bits (154), Expect = 8e-28
Identities = 151/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || || ||||| || || ||||| || || | || || | || ||
Sbjct 30597 AGAACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCGTCC 30538
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| ||||||||||| || || |||||||| |||| || |||||||||
Sbjct 30537 TCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 30478
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| ||||| || |||||||| ||||| |||||||| || ||||| |||
Sbjct 30477 TGAATCTTCGACTTCACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTC 30418
Query 211083 TTTCCCGTGAGAGTCTTTAC 211102
|| || ||||| ||||| ||
Sbjct 30417 TTGCCGGTGAGGGTCTTGAC 30398
Score = 134 bits (148), Expect = 3e-26
Identities = 159/213 (75%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961
|||||||||||||| || || || || || ||||| ||||| | ||||| | | || ||
Sbjct 31053 AGGACAAGGTGAAGCGTAGATTCCTTCTGAATGTTGTAATCGCTCAAGG-TGCGGCCGTC 30995
Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
||||| |||||||| ||||| || || || || |||||||| || | || ||||||||
Sbjct 30994 TTCCAATTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTC 30935
Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081
||| ||||| |||||||| || || ||||| || || || || | ||||| ||
Sbjct 30934 CTGAATCTTGGACTTCACGTTGTCAATCGTGTCGGAAGACTCGACTTCTAACGTGATTGT 30875
Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||| || | ||||| || || | ||||||
Sbjct 30874 CTTTCCGGTCAATGTCTTGACGAAGATCTGCAT 30842
>seq259
Length=323629
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| ||||| | ||||| | || || || ||||||||||| ||||||||
Sbjct 46417 TTCTGGATGTTGTAATCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATC 46358
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| ||| |||||||| || |||| || ||||||||||||||||| || || || |||
Sbjct 46357 AAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 46298
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| ||| || ||||| || || || ||||| ||||| || ||||| || ||
Sbjct 46297 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 46239
>seq49
Length=112291
Score = 104 bits (114), Expect = 5e-17
Identities = 188/275 (68%), Gaps = 0/275 (0%)
Strand=Plus/Plus
Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152
|||||| ||||||||||| | | |||||| ||||| ||||| || | ||
Sbjct 50596 GTTCTTCTGGTTGCTCTTGCGGTTTGCGGCATCCTTGTAAAGCATGAAAGGGTTGCCAGT 50655
Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212
||||| |||||| ||||||| | |||||||| |||||| || ||||| |
Sbjct 50656 CTCAGTCTGAGCCTCGAGAATTGCGTACCAAAGCTTCTGGGCCTTGATGGTCTTGCGACC 50715
Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272
|| || || ||||||||| | ||| | ||||||| ||| || ||| ||| |
Sbjct 50716 CTTGCCCTCCCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGC 50775
Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTT 178332
|||||||| ||||||||| || | ||| |||| | | ||| | || |||| ||
Sbjct 50776 CAGACCGGGGCACTCATTGGGACACATGAGGGTCCAGTCAGCGTTCTTCTCGACTCTCTT 50835
Query 178333 CATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367
|||||| || || | | |||||| |||| |||||
Sbjct 50836 CATGAATAGATCGGGGATCCAGAGGGCAAGGAAAA 50870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159147232625165
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |