Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq57 89.7 4e-13
seq6 86.0 5e-12
>seq57
Length=484889
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||| || || ||| ||| || || || || || || | || || || |||| ||
Sbjct 315907 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCGTCCTCG 315848
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
||||| || || || || || || ||||||||||||| ||| | || ||| || ||| |
Sbjct 315847 AGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGG 315788
Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255
|| || |||| | | | || ||| ||||||||| || | |||||| | ||
Sbjct 315787 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 315728
Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|||||||| || || || ||||| |||||
Sbjct 315727 CCCGTCAGGGTCTTGACGAAGATCTGCAT 315699
>seq6
Length=179136
Score = 86.0 bits (94), Expect = 5e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
||||| || || || ||| || || ||||| || |||| ||| ||||| |||| |||
Sbjct 30310 ACCAAGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAAAGGGTTCGGCCGTCCTCA 30251
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192
||||| ||||| || || ||||||||||| ||||| | ||| | || || ||||||
Sbjct 30250 AGCTGCTTGCCAGCGAAGATAAGACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTCC 30194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429543919537073
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |