Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq57 89.7 4e-13 seq6 86.0 5e-12 >seq57 Length=484889 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| ||| || || || || || || | || || || |||| || Sbjct 315907 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCGTCCTCG 315848 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || || || || || ||||||||||||| ||| | || ||| || ||| | Sbjct 315847 AGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGG 315788 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| | | | || ||| ||||||||| || | |||||| | || Sbjct 315787 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 315728 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||||| || || || ||||| ||||| Sbjct 315727 CCCGTCAGGGTCTTGACGAAGATCTGCAT 315699 >seq6 Length=179136 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || ||||| || |||| ||| ||||| |||| ||| Sbjct 30310 ACCAAGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAAAGGGTTCGGCCGTCCTCA 30251 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 ||||| ||||| || || ||||||||||| ||||| | ||| | || || |||||| Sbjct 30250 AGCTGCTTGCCAGCGAAGATAAGACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTCC 30194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429543919537073