Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq57 143 6e-29
seq6 140 8e-28
seq317 138 3e-27
seq259 111 4e-19
>seq57
Length=484889
Score = 143 bits (158), Expect = 6e-29
Identities = 165/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | |||||| |||||||| ||||| || || |||| ||||| || | | ||
Sbjct 315920 ACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGT 315861
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| ||||||||||| || || || |||||||| || || ||
Sbjct 315860 GCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCC 315801
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||| || |||||||| ||| ||| ||||||||||| || | ||||| || |
Sbjct 315800 CTCCTTATCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAG 315741
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||||||||||| || || | ||| | |||||
Sbjct 315740 GGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 315699
>seq6
Length=179136
Score = 140 bits (154), Expect = 8e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || || || || || || || || | || ||||| | || || | |||||
Sbjct 30825 AGGACGAGATGCAGGGTAGACTCCTTCTGAATGTTATAATCCGACAGGGTGCGACCATCC 30766
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| ||||| | || || |||||||| || || || |||||||||
Sbjct 30765 TCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCT 30706
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| || ||||||||||| | ||| || || | ||| ||||||
Sbjct 30705 TGGATCTTCGACTTGACATTGTCAATGGTGTCTGAAGATTCGACCTCGAGCGTAATCGTC 30646
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||| ||| || | ||| | ||||||
Sbjct 30645 TTGCCTGTCAGAGTCTTGACGAAGATTTGCAT 30614
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||||||||| || || ||||| || || | ||||||||| ||| || | || |||
Sbjct 31053 AGGACAAGGTGAAGCGTAGATTCCTTCTGAATGTTGTAATCGCTCAAGGTGCGGCCGTCT 30994
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | ||||| |||||||| || || || || ||||| || || || || ||||||||
Sbjct 30993 TCCAATTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCC 30934
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| |||||| || || ||||| || | || || ||||||||||| |||
Sbjct 30933 TGAATCTTGGACTTCACGTTGTCAATCGTGTCGGAAGACTCGACTTCTAACGTGATTGTC 30874
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || ||||| || || | ||| | |||||
Sbjct 30873 TTTCCGGTCAATGTCTTGACGAAGATCTGCAT 30842
Score = 118 bits (130), Expect = 3e-21
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||| || || || || || || | |||||| |||| | ||
Sbjct 30323 ACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAAAGGGT 30264
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| || || || |||||||| |||||||||||||| || |||||||| || || || ||
Sbjct 30263 TCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGTTGGTCTGGGGGGATGCC 30204
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||| || ||||| ||| || || || || || |||| ||| || || |
Sbjct 30203 TTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCGGAGGATTCGACCTCAAG 30144
Query 225672 CGTGATCGTCTTGCCCGT 225689
||||| |||||||| ||
Sbjct 30143 AGTGATGGTCTTGCCGGT 30126
Score = 114 bits (126), Expect = 3e-20
Identities = 138/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | |||||| || || || || || | ||||| |||| || ||| | || ||
Sbjct 30597 AGAACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCGTCC 30538
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| || ||||||||||| || || ||||| || ||||| || ||||||||
Sbjct 30537 TCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 30478
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||||||| |||||||| || || | || || || | ||||| |||
Sbjct 30477 TGAATCTTCGACTTCACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTC 30418
Query 225682 TTGCCCGT 225689
||||| ||
Sbjct 30417 TTGCCGGT 30410
>seq317
Length=194037
Score = 138 bits (152), Expect = 3e-27
Identities = 201/281 (72%), Gaps = 5/281 (2%)
Strand=Plus/Plus
Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499
||| ||||||||||| |||| | |||||||| | ||||||| || ||| | |
Sbjct 2556 AACTTTATATTTAATTTTTGCTTTATTTTCTGGGTTATTAGGTACAGCTTTCTCTGTATT 2615
Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAATAGCCAACTTT 7558
||||| ||||||||| || || ||| |||| ||||| | |||| ||| | |
Sbjct 2616 AATAAGATTAGAATTAAGTGGACCAGGTGTTCAATATATTTCA-GATAAT---CAATTAT 2671
Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618
| ||| ||| || || || ||||| | | |||||||||||| | |||||||| |
Sbjct 2672 ATAACAGTATAATAACAGCACATGCTATATTGATGATTTTCTTTATGGTTATGCCTGCAT 2731
Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678
| || || ||||| || || | || | ||||||||| | || | ||| || ||||| |
Sbjct 2732 TAATTGGAGGTTTTGGTAACTTCTTAATGCCTTTAATGGTAGGAGGTCCCGACATGGCCT 2791
Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719
||||||| || || ||||||||||| |||||| |||| |||
Sbjct 2792 TTCCAAGACTAAATAATATAAGTTTCTGATTATTACCACCT 2832
Score = 131 bits (144), Expect = 4e-25
Identities = 90/102 (88%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
|||||| ||||||||||||||||||||||||||||| || |||||||| ||||| ||||
Sbjct 3237 TTCAGGGTGACCAAAAAATCAGAATAAATGTTGATATAGTATAGGATCACCTCCTCCTGC 3178
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773
|| ||||||||| ||||||||||||||||| ||||||||
Sbjct 3177 TGTTTCAAAAAAGGATGTATTAAAATTTCTATCTGTTAAAAC 3136
>seq259
Length=323629
Score = 111 bits (122), Expect = 4e-19
Identities = 132/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| |||||||||| | || | || || || |||||||| |||||||||||
Sbjct 46417 TTCTGGATGTTGTAATCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATC 46358
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| || |||||||| || ||||| || |||||||| |||||||| ||| ||| |||
Sbjct 46357 AAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 46298
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|| ||||| |||| || || || | || || ||||| ||||||| || || | |||
Sbjct 46297 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 46239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192526295342774
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |