Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq57 114 3e-20
seq6 102 2e-16
seq259 84.2 5e-11
>seq57
Length=484889
Score = 114 bits (126), Expect = 3e-20
Identities = 155/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || || || ||||| || ||||||||||| || | | || | || ||
Sbjct 315910 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCGTCC 315851
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| || |||||||| || | ||||||||| | | ||| || ||||| |
Sbjct 315850 TCGAGCTGCTTT--CCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTAT 315793
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| || || || |||||| | || | | |||| || ||| || ||||| || ||||
Sbjct 315792 CCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAG 315733
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| |||||||| || ||||| ||||||| ||||||
Sbjct 315732 TCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 315699
>seq6
Length=179136
Score = 102 bits (112), Expect = 2e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| || | || || |||||||| || || |||||||| |||| | ||| |
Sbjct 30604 GAGACGGAGAACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCG 30545
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|| || || || || |||||||||||||| | ||||||||| | | || || ||
Sbjct 30544 ACCGTCCTCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATGCCCTC 30485
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || ||||| || || ||| | || | | | || ||| ||| || ||||| ||
Sbjct 30484 CTTGTCCTGAATCTTCGACTTCACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGT 30425
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGA 152094
|| || ||||| ||||| ||||| ||||
Sbjct 30424 GATGGTCTTGCCGGTGAGGGTCTTGACGA 30396
Score = 96.9 bits (106), Expect = 8e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||||||||| ||||| ||||| || || || |||||||||||| || || | || ||
Sbjct 31054 GAGGACAAGGTGAAGCGTAGATTCCTTCTGAATGTTGTAATCGCTCAAGGTGCGGCCGTC 30995
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
||| | || || ||||| || || | ||||||||| | | ||| || ||||| ||
Sbjct 30994 TTCCAATTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTC 30935
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||||| || || || | || | |||| ||| ||| ||||| | || || ||
Sbjct 30934 CTGAATCTTGGACTTCACGTTGTCAATCGTGTCGGAAGACTCGACTTCTAACGTGATTGT 30875
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || | ||||| ||||||| ||||||
Sbjct 30874 CTTTCCGGTCAATGTCTTGACGAAGATCTGCAT 30842
>seq259
Length=323629
Score = 84.2 bits (92), Expect = 5e-11
Identities = 133/190 (70%), Gaps = 2/190 (1%)
Strand=Plus/Minus
Query 151908 GTAGACT--CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCC 151965
||||||| | || |||||||||||||||| | || | || || || || || |
Sbjct 46428 GTAGACTAACCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGC 46369
Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025
| |||||||| | | ||| ||||||| | || || ||||| || || || || |
Sbjct 46368 CAGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACT 46309
Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085
||||| | || | |||| || ||| || ||||| ||||| || || ||||| || |
Sbjct 46308 TGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGG 46249
Query 152086 TCTTCACGAA 152095
||||||||||
Sbjct 46248 TCTTCACGAA 46239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153816054551391
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |