Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq57 114 3e-20 seq6 102 2e-16 seq259 84.2 5e-11 >seq57 Length=484889 Score = 114 bits (126), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| || | | || | || || Sbjct 315910 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCGTCC 315851 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || |||||||| || | ||||||||| | | ||| || ||||| | Sbjct 315850 TCGAGCTGCTTT--CCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTAT 315793 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || |||||| | || | | |||| || ||| || ||||| || |||| Sbjct 315792 CCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAG 315733 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | |||||||| || ||||| ||||||| |||||| Sbjct 315732 TCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 315699 >seq6 Length=179136 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || || |||||||| || || |||||||| |||| | ||| | Sbjct 30604 GAGACGGAGAACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCG 30545 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || |||||||||||||| | ||||||||| | | || || || Sbjct 30544 ACCGTCCTCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATGCCCTC 30485 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || || ||| | || | | | || ||| ||| || ||||| || Sbjct 30484 CTTGTCCTGAATCTTCGACTTCACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGT 30425 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 || || ||||| ||||| ||||| |||| Sbjct 30424 GATGGTCTTGCCGGTGAGGGTCTTGACGA 30396 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| ||||| ||||| || || || |||||||||||| || || | || || Sbjct 31054 GAGGACAAGGTGAAGCGTAGATTCCTTCTGAATGTTGTAATCGCTCAAGGTGCGGCCGTC 30995 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| | || || ||||| || || | ||||||||| | | ||| || ||||| || Sbjct 30994 TTCCAATTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTC 30935 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || || || | || | |||| ||| ||| ||||| | || || || Sbjct 30934 CTGAATCTTGGACTTCACGTTGTCAATCGTGTCGGAAGACTCGACTTCTAACGTGATTGT 30875 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||||| ||||||| |||||| Sbjct 30874 CTTTCCGGTCAATGTCTTGACGAAGATCTGCAT 30842 >seq259 Length=323629 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/190 (70%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 151908 GTAGACT--CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCC 151965 ||||||| | || |||||||||||||||| | || | || || || || || | Sbjct 46428 GTAGACTAACCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGC 46369 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 | |||||||| | | ||| ||||||| | || || ||||| || || || || | Sbjct 46368 CAGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACT 46309 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 ||||| | || | |||| || ||| || ||||| ||||| || || ||||| || | Sbjct 46308 TGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGG 46249 Query 152086 TCTTCACGAA 152095 |||||||||| Sbjct 46248 TCTTCACGAA 46239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153816054551391