Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq57 145 5e-30 seq6 132 3e-26 seq259 118 8e-22 >seq57 Length=484889 Score = 145 bits (160), Expect = 5e-30 Identities = 175/236 (74%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || |||||||| || ||| |||||| ||||||||||| || Sbjct 315929 CATACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 315870 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| |||| || |||||||| || || ||||||| |||||||| || | Sbjct 315869 TGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGG 315810 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 || | || ||||| ||| ||||| ||| || ||| | |||||||||| || Sbjct 315809 GGGGATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGACGAC 315752 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 |||||||| | || || ||||| ||||| |||||||| |||||||| |||||||| Sbjct 315751 TCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGAT 315696 >seq6 Length=179136 Score = 132 bits (146), Expect = 3e-26 Identities = 147/194 (76%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| || ||||| ||||| | || ||| | || || |||||||| || ||||| Sbjct 30805 CTCCTTCTGAATGTTATAATCCGACAGGGTGCGACCATCCTCGAGCTGCTTTCCAGCAAA 30746 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAAT 44263 ||||||||||||||| || | ||| | || ||||| || |||||| ||| || | Sbjct 30745 GATCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACATT 30686 Query 44264 GTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 || | |||||||| | ||||| ||||| | |||||||||||| || || || ||||| Sbjct 30685 GT--CAATGGTGTCTGAAGATTCGACCTCGAGCGTAATCGTCTTGCCTGTCAGAGTCTTG 30628 Query 44324 ACGAAGATTTGCAT 44337 |||||||||||||| Sbjct 30627 ACGAAGATTTGCAT 30614 Score = 107 bits (118), Expect = 1e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| ||||| |||||| || |||||||| |||| || ||| |||| || Sbjct 30594 ACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCGTCCTCA 30535 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| ||||| | ||||||||| || | || | || ||||| ||| Sbjct 30534 AGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGA 30475 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | ||||| || | || || ||||| | || || ||||| Sbjct 30474 ATCTTCGACTTCACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTG 30415 Query 44309 CCCGTGAGGGTCTTCACGA 44327 || ||||||||||| |||| Sbjct 30414 CCGGTGAGGGTCTTGACGA 30396 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG-GCGAGTTGGCGCTCGTCGTC 44187 || ||||||||||| ||||| || |||||||||||| | || | ||| |||| || Sbjct 31050 ACAAGGTGAAGCGTAGATTCCTTCTGAATGTTGTAATCGCTCAAGGT-GCGGCCGTCTTC 30992 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| || || || || | ||||||||| || | || | || ||||| ||| Sbjct 30991 CAATTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTG 30932 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | || ||||||| || || || || | ||| || ||||| Sbjct 30931 AATCTTGGACTTCACGTTGTCAATCGTGTCGGAAGACTCGACTTCTAACGTGATTGTCTT 30872 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | ||||| |||||||| ||||| Sbjct 30871 TCCGGTCAATGTCTTGACGAAGATCTGCAT 30842 >seq259 Length=323629 Score = 118 bits (130), Expect = 8e-22 Identities = 137/183 (75%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| |||||||||||||||| ||| ||| |||| || |||||||| || || |||| Sbjct 46419 CCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGA 46360 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| ||||| || || | || | || ||||| ||| ||||| ||| || ||| Sbjct 46359 TCAAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 46300 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||| | ||| || ||||| | ||||| ||||| ||||| ||||||||||| Sbjct 46299 --CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 46242 Query 44326 GAA 44328 ||| Sbjct 46241 GAA 46239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988991650057