Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq6 156 1e-32
seq57 129 1e-24
>seq6
Length=179136
Score = 156 bits (172), Expect = 1e-32
Identities = 158/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || ||||| ||||| || ||||| || |||||||| ||| ||||||
Sbjct 30617 CAAATCTTCGTCAAGACTCTGACAGGCAAGACGATTACGCTCGAGGTCGAATCTTCAGAC 30676
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| ||||| || ||||| || || |||||||| ||||||||
Sbjct 30677 ACCATTGACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAGCAG 30736
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| || ||||| |||||||| ||||| | || || | ||||||||| |
Sbjct 30737 CGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGTCGCACCCTGTCGGATTATAACATT 30796
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || |||||||| ||
Sbjct 30797 CAGAAGGAGTCTACCCTGCATCTCGT 30822
Score = 120 bits (132), Expect = 7e-22
Identities = 148/201 (74%), Gaps = 1/201 (0%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || ||||| || || || |||||||| ||||| || || || |||||||
Sbjct 30396 TCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCG 30455
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| || || || |||||||||||||| || || || || || |||||||| || ||||
Sbjct 30456 ACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTCTTA 30515
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
|||||||||| || || || || || || | ||||| |||| || ||| | || || |
Sbjct 30516 TCTTCGCCGGCAAGCAACTTGAGGACGGTCGCACTCTGTCCGACTACAACATTCAGAAGG 30575
Query 178111 AATCAACACTGCATCTTGTTT 178131
| || || || || |||| ||
Sbjct 30576 AGTCTACGCTCCA-CTTGGTT 30595
Score = 116 bits (128), Expect = 9e-21
Identities = 140/189 (74%), Gaps = 1/189 (1%)
Strand=Plus/Plus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || ||||| || ||||| ||| ||| || || || || ||||||||
Sbjct 30124 TCACCGGCAAGACCATCACTCTTGAGGTCGAATCCTCCGATACTATTGACAACGTCAAGT 30183
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
|||||||||||||| ||||| ||||| || ||||| || || ||||||||||| || |
Sbjct 30184 CCAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAACAGCGTCTTATCTTCGCTGGCA 30243
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| ||||| || || || | || ||| |||| || || | || || || || || || |
Sbjct 30244 AGCAGCTTGAGGACGGCCGAACCCTTTCCGACTACAATATTCAGAAGGAGTCTACCCTTC 30303
Query 178123 ATCTTGTTT 178131
| |||| ||
Sbjct 30304 A-CTTGGTT 30311
Score = 100 bits (110), Expect = 7e-16
Identities = 148/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || ||||| || ||||| | || || || || |||
Sbjct 30845 CAGATCTTCGTCAAGACATTGACCGGAAAGACAATCACGTTAGAAGTCGAGTCTTCCGAC 30904
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| || |||||||||||||| || || ||||| || ||||||||
Sbjct 30905 ACGATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAG 30964
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| || || ||||| || || || | ||||| || | || |||| |||||| ||| |
Sbjct 30965 CGTCTCATTTTCGCTGGCAAGCAATTGGAAGACGGCCGCAC-CTTGAGCGATTACAACAT 31023
Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||||| || || || |||||
Sbjct 31024 TCAGAAGGAATCTACGCTTCACCTTGT 31050
>seq57
Length=484889
Score = 129 bits (142), Expect = 1e-24
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || || || || |||||||| |||||||| || |||
Sbjct 315702 CAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCCGAC 315761
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| ||||| || || || ||||| || ||||||||
Sbjct 315762 ACCATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAGCAG 315821
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| ||||| |||||||| || || | || || | || || ||| ||
Sbjct 315822 CGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCAGACTACAACATC 315881
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 315882 CAGAAGGAGTCCACCCTCCACCTGGT 315907
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203726249279274
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |