Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq57 161 9e-35
seq259 141 9e-29
seq6 123 2e-23
seq113 89.7 5e-13
>seq57
Length=484889
Score = 161 bits (178), Expect = 9e-35
Identities = 175/230 (76%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| || || ||| ||||||||| ||||| ||||| |||
Sbjct 315925 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAG 315866
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| ||||||||||| || ||||| ||||||||||| ||||| | |||
Sbjct 315865 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 315806
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||| ||| ||| || ||| || | || | |||||| ||||||||
Sbjct 315805 ATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGACGACTCCA 315748
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || || || |||||||| ||||| ||||| |||||||||
Sbjct 315747 CCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 315698
>seq259
Length=323629
Score = 141 bits (156), Expect = 9e-29
Identities = 143/184 (78%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| || |||||||||||||| |||| || ||||||||||| ||||| |
Sbjct 46419 CCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGA 46360
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
||| |||||||||||||| ||||| || |||||||||| ||| || ||| || |
Sbjct 46359 TCAAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 46300
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | ||||| ||||| ||||| | || || || ||||||||||| ||||| ||
Sbjct 46299 CG--ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 46242
Query 41851 GAAA 41854
||||
Sbjct 46241 GAAA 46238
>seq6
Length=179136
Score = 123 bits (136), Expect = 2e-23
Identities = 162/219 (74%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | |||| || ||||| ||||||||||||||| ||||||||
Sbjct 30612 CCGCCACGGAGACGGAGAACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCGGAC 30553
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| || || |||||||||||||| || || ||||| ||||| | ||||
Sbjct 30552 AGAGTGCGACCGTCCTCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGA 30493
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| | || | |||| || | | | || || ||||| |
Sbjct 30492 ATGCCCTCCTTGTCC-TGAATCTTCGACTTC-ACATTGTCGATGGTATCAGAAGACTCAA 30435
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852
|||| | || || || || || || || ||||| ||||
Sbjct 30434 CCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 30396
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | || |||||||| || |||||||||||||||||| || ||
Sbjct 30840 CCACCGCGGAGGCGAAGGACGAGATGCAGGGTAGACTCCTTCTGAATGTTATAATCCGAC 30781
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || ||||||||||| || || || |||| ||||| ||||| | ||
Sbjct 30780 AGGGTGCGACCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGG 30721
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || ||||||||| ||| || ||| || | | | ||||| || || ||
Sbjct 30720 ATGCCCTCCTTGTCTTGGATCTTCGACTT-GACATTGTCAATGGTGTCTGAAGATTCGAC 30662
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | ||| ||||| || || ||||| ||||| ||||| || |||||
Sbjct 30661 CTCGAGCGTAATCGTCTTGCCTGTCAGAGTCTTGACGAAGATTTGCAT 30614
Score = 105 bits (116), Expect = 6e-18
Identities = 153/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|| || || ||||| |||||||||||||| || ||| | |||||| |||| ||
Sbjct 31050 ACAAGGTGAAGCGTAGATTCCTTCTGAATGTTGTAATCGCTCAAGGTGCGGCCGTCTTCC 30991
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
| |||||||| ||||| || || ||||| ||||| | || | || |||||||||| ||
Sbjct 30990 AATTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCC-TG 30932
Query 41774 ATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831
| | || | |||| ||| | | | |||||| ||||| || || | ||| || || |
Sbjct 30931 AATCTTGGACTTC-ACGTTGTCAATCGTGTCGGAAGACTCGACTTCTAACGTGATTGTCT 30873
Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || |||| ||||| ||||| ||||||||
Sbjct 30872 TTCCGGTCAATGTCTTGACGAAGATCTGCAT 30842
Score = 100 bits (110), Expect = 3e-16
Identities = 82/100 (82%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
|||||||||||| || |||||||| ||||| || |||| || ||||||||||| |||||
Sbjct 30293 CTCCTTCTGAATATTGTAGTCGGAAAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 30234
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770
|| || ||||||||||| | ||| | || |||||||||
Sbjct 30233 GATAAGACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTCC 30194
>seq113
Length=441198
Score = 89.7 bits (98), Expect = 5e-13
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 85804 TCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTCATCG 85863
|||| || || |||||||||||| |||| || |||||| |||||||| ||||| |
Sbjct 310806 TCGCCCCCCGCTCCGGCCTCGCCTCCAAGAACTTCATCGACACCGGCGCCGGCGTCATTG 310747
Query 85864 ACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912
| |||||||||||||| | |||| || | ||||||||||||| |||
Sbjct 310746 ATGCCGACTACCGCGGCCAGGTCAAGGTCCTGCTCTTCAACCACGCCGA 310698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462302145005200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |