Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1058 105 7e-18 >seq1058 Length=49244 Score = 105 bits (116), Expect = 7e-18 Identities = 197/287 (69%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || |||||||| ||| ||| | || ||||| ||||||||||| ||||| Sbjct 16689 ATGTAAGTGTCGATGAGGAGGGAGTAGGTCTCAGAGTGAATGTTCTCCATCATGATCTGG 16748 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||| ||||| || || || | | || ||||| || |||| || || | || Sbjct 16749 AAACCGTAGAAGCAGCGAGCCTCAGGGACCTGGACTTCGCCGGAGAAGCGCTCAACGAGG 16808 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 || ||||| |||||||||||| |||||||| || || | || || ||||| || Sbjct 16809 TTCTCGTTGACGATGCCGTCGGATGCGGCGAAGAAGGCAAGGATGTGAGAGATGAAGTAC 16868 Query 17414 TTTTCGTC--CGGTG-TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470 || || || || || | | |||||| | | ||| ||||| | ||| | || Sbjct 16869 TTCTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCC 16928 Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 || | |||||| ||| ||| | ||||| |||||||| | ||| || Sbjct 16929 TCAGCGGTCCAGAAAGAGGCCTCAGCCTTCTTATACATTTGCCAGAT 16975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517527641167680