Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq1058 105 7e-18
>seq1058
Length=49244
Score = 105 bits (116), Expect = 7e-18
Identities = 197/287 (69%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
|| || || |||||||| ||| ||| | || ||||| ||||||||||| |||||
Sbjct 16689 ATGTAAGTGTCGATGAGGAGGGAGTAGGTCTCAGAGTGAATGTTCTCCATCATGATCTGG 16748
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353
|| ||||| ||||| || || || | | || ||||| || |||| || || | ||
Sbjct 16749 AAACCGTAGAAGCAGCGAGCCTCAGGGACCTGGACTTCGCCGGAGAAGCGCTCAACGAGG 16808
Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413
|| ||||| |||||||||||| |||||||| || || | || || ||||| ||
Sbjct 16809 TTCTCGTTGACGATGCCGTCGGATGCGGCGAAGAAGGCAAGGATGTGAGAGATGAAGTAC 16868
Query 17414 TTTTCGTC--CGGTG-TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470
|| || || || || | | |||||| | | ||| ||||| | ||| | ||
Sbjct 16869 TTCTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCC 16928
Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517
|| | |||||| ||| ||| | ||||| |||||||| | ||| ||
Sbjct 16929 TCAGCGGTCCAGAAAGAGGCCTCAGCCTTCTTATACATTTGCCAGAT 16975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517527641167680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |