Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 138 1e-27
>seq1932
Length=74184
Score = 138 bits (152), Expect = 1e-27
Identities = 442/683 (65%), Gaps = 12/683 (2%)
Strand=Plus/Minus
Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055
|||||||| | | ||| || ||| | || |||| ||||| || ||||| || |||
Sbjct 58811 GGACACATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATC 58752
Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115
|| || || | || || || | | | ||||| || || ||||| |
Sbjct 58751 CAGAGGGCGAGGAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAG 58692
Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175
|| | |||| | | | ||| | ||||| || || | ||| |||| | | |||||
Sbjct 58691 TCCATGAACTCAAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGA 58632
Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235
|| ||||| || ||||| || | ||| | ||| ||||| || | || | | ||| |||
Sbjct 58631 CGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGA 58572
Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT-- 54293
|| | ||| || || | || ||||| |||| |||||| ||| ||||||| |||
Sbjct 58571 ATGACACCGTTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGG 58512
Query 54294 TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 54353
| |||| |||| || || || ||||| || ||||| | ||||| || | |
Sbjct 58511 TGGGCGTTGA--GACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGG 58454
Query 54354 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 54413
| || ||||| ||||| || || ||| |||||| | || || || ||||| |
Sbjct 58453 TGTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCT 58394
Query 54414 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 54473
|| || || || || || || | || || || ||||| || || | || |
Sbjct 58393 GGCACTGAGGGGTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGG 58334
Query 54474 AAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC----CCATTGATGAATTCCTACT 54529
| | || ||||| ||||| || | || | ||| || |||| || |||
Sbjct 58333 ACATGAGGTTGTAGGTCTCAATGACGCGCTCAACATCGTCACCCCAGATG----CCGACT 58278
Query 54530 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAG 54589
||||||||||| | ||||||||| ||||| || | |||||| || | ||||||| |
Sbjct 58277 GCGACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTCAGCAGG 58218
Query 54590 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 54649
|| ||| | |||| ||||| ||||| || || | ||| ||||| || ||||| | |
Sbjct 58217 TATGATCTCTCCAGGGTTTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACA 58158
Query 54650 ATAACTGAGTTGAGTTTATCCTT 54672
|| | |||| ||| | |||||
Sbjct 58157 ATGGCAGAGTCGAGCTCCTCCTT 58135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593700997860480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |