Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1932 138 1e-27 >seq1932 Length=74184 Score = 138 bits (152), Expect = 1e-27 Identities = 442/683 (65%), Gaps = 12/683 (2%) Strand=Plus/Minus Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 |||||||| | | ||| || ||| | || |||| ||||| || ||||| || ||| Sbjct 58811 GGACACATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATC 58752 Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 || || || | || || || | | | ||||| || || ||||| | Sbjct 58751 CAGAGGGCGAGGAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAG 58692 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175 || | |||| | | | ||| | ||||| || || | ||| |||| | | ||||| Sbjct 58691 TCCATGAACTCAAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGA 58632 Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235 || ||||| || ||||| || | ||| | ||| ||||| || | || | | ||| ||| Sbjct 58631 CGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGA 58572 Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT-- 54293 || | ||| || || | || ||||| |||| |||||| ||| ||||||| ||| Sbjct 58571 ATGACACCGTTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGG 58512 Query 54294 TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 54353 | |||| |||| || || || ||||| || ||||| | ||||| || | | Sbjct 58511 TGGGCGTTGA--GACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGG 58454 Query 54354 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 54413 | || ||||| ||||| || || ||| |||||| | || || || ||||| | Sbjct 58453 TGTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCT 58394 Query 54414 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 54473 || || || || || || || | || || || ||||| || || | || | Sbjct 58393 GGCACTGAGGGGTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGG 58334 Query 54474 AAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC----CCATTGATGAATTCCTACT 54529 | | || ||||| ||||| || | || | ||| || |||| || ||| Sbjct 58333 ACATGAGGTTGTAGGTCTCAATGACGCGCTCAACATCGTCACCCCAGATG----CCGACT 58278 Query 54530 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAG 54589 ||||||||||| | ||||||||| ||||| || | |||||| || | ||||||| | Sbjct 58277 GCGACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTCAGCAGG 58218 Query 54590 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 54649 || ||| | |||| ||||| ||||| || || | ||| ||||| || ||||| | | Sbjct 58217 TATGATCTCTCCAGGGTTTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACA 58158 Query 54650 ATAACTGAGTTGAGTTTATCCTT 54672 || | |||| ||| | ||||| Sbjct 58157 ATGGCAGAGTCGAGCTCCTCCTT 58135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593700997860480