Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq609 154 2e-32 >seq609 Length=46141 Score = 154 bits (170), Expect = 2e-32 Identities = 282/405 (70%), Gaps = 16/405 (4%) Strand=Plus/Minus Query 145870 ACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGG 145928 ||||||||||| ||| | | ||||| ||||| |||||||| ||| ||||| || Sbjct 45061 ACGTAGAACTGCGCAAAC-ATATGGCACGGCGGGAGGGCCATCTTCTTCAGATCCGCTGG 45003 Query 145929 GTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCG---GGGTTCCTCTTGATCTCCCCTAT 145985 |||||| ||| |||||| || | | || ||| |||||| |||||| || || Sbjct 45002 GTTCCACGCGCTGAGGAGGA---TTCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGAT 44946 Query 145986 CAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGC 146045 | || || ||||| | ||| || | |||||| ||||||||||| |||||| | Sbjct 44945 TACCTCGGCCAGTTGGTCAATGCCTTGTGCTGTGTAATCCGTCTTGGAGTCGACGTACTC 44886 Query 146046 GGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTG 146105 ||| || ||||| | ||| ||||| |||||||| || || ||||| ||| || | ||| Sbjct 44885 GGCGCCAAAGTGACGCCATTGGAAGCCGTAGACAGGGCCGAGGTCGCCGACTTCGCGGTG 44826 Query 146106 CCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC 146165 || ||| | | | ||||||| || || || |||||| ||||||||||||||||||| Sbjct 44825 TGAGAGGCCGACGCTGTCGAGGAACTCACGCGATCCGTTGCCGTCCCAGATCTTGACGCC 44766 Query 146166 --CCTCGCGGAGAGC--TCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTT 146221 | |||| || || | || || || | ||| || |||||| || || ||| Sbjct 44765 TGCTTCGCTCAGGGCGAGCGATGATGT--GTTG--CCCTCGACGAACCACAGAAGTTCTG 44710 Query 146222 CGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266 ||| ||| | | |||||| | ||| || || || ||||||| Sbjct 44709 CGATGACTGCGCGGAGGAAGACACGCTTCGTTGTGAGGAGGGGGA 44665 Score = 113 bits (124), Expect = 5e-20 Identities = 139/188 (74%), Gaps = 14/188 (7%) Strand=Plus/Minus Query 145671 CAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTG 145730 |||||| | ||| || | |||||||||| | || ||||||||||| |||| |||||| Sbjct 45317 CAGCTGCACCTTGAGCGCGTCCACGTGGTCCACATACACGTGCGCGTCGCCCATGACGTG 45258 Query 145731 GATGAAG-TCCCCGG-----GCTCG-AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCA 145783 ||| | | ||||| | ||| | ||||| | | | ||||| ||||| | Sbjct 45257 CGTGAGGCTTCCCGGCACCAGATCGCACGCCCGCG-------CAATCATGTGCGTCAGGA 45205 Query 145784 GGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACA 145843 | | ||||||||| |||||||||||||| || || |||||||| | || |||||||||| Sbjct 45204 GCGCGTAGCTGGCAATGTTGAAGGGCACGCCGAGTCCCATGTCGCAGGACCGCTGGTACA 45145 Query 145844 GCTGGCAG 145851 |||||||| Sbjct 45144 GCTGGCAG 45137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590056324335040