Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq609 154 2e-32
>seq609
Length=46141
Score = 154 bits (170), Expect = 2e-32
Identities = 282/405 (70%), Gaps = 16/405 (4%)
Strand=Plus/Minus
Query 145870 ACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGG 145928
||||||||||| ||| | | ||||| ||||| |||||||| ||| ||||| ||
Sbjct 45061 ACGTAGAACTGCGCAAAC-ATATGGCACGGCGGGAGGGCCATCTTCTTCAGATCCGCTGG 45003
Query 145929 GTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCG---GGGTTCCTCTTGATCTCCCCTAT 145985
|||||| ||| |||||| || | | || ||| |||||| |||||| || ||
Sbjct 45002 GTTCCACGCGCTGAGGAGGA---TTCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGAT 44946
Query 145986 CAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGC 146045
| || || ||||| | ||| || | |||||| ||||||||||| |||||| |
Sbjct 44945 TACCTCGGCCAGTTGGTCAATGCCTTGTGCTGTGTAATCCGTCTTGGAGTCGACGTACTC 44886
Query 146046 GGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTG 146105
||| || ||||| | ||| ||||| |||||||| || || ||||| ||| || | |||
Sbjct 44885 GGCGCCAAAGTGACGCCATTGGAAGCCGTAGACAGGGCCGAGGTCGCCGACTTCGCGGTG 44826
Query 146106 CCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC 146165
|| ||| | | | ||||||| || || || |||||| |||||||||||||||||||
Sbjct 44825 TGAGAGGCCGACGCTGTCGAGGAACTCACGCGATCCGTTGCCGTCCCAGATCTTGACGCC 44766
Query 146166 --CCTCGCGGAGAGC--TCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTT 146221
| |||| || || | || || || | ||| || |||||| || || |||
Sbjct 44765 TGCTTCGCTCAGGGCGAGCGATGATGT--GTTG--CCCTCGACGAACCACAGAAGTTCTG 44710
Query 146222 CGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266
||| ||| | | |||||| | ||| || || || |||||||
Sbjct 44709 CGATGACTGCGCGGAGGAAGACACGCTTCGTTGTGAGGAGGGGGA 44665
Score = 113 bits (124), Expect = 5e-20
Identities = 139/188 (74%), Gaps = 14/188 (7%)
Strand=Plus/Minus
Query 145671 CAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTG 145730
|||||| | ||| || | |||||||||| | || ||||||||||| |||| ||||||
Sbjct 45317 CAGCTGCACCTTGAGCGCGTCCACGTGGTCCACATACACGTGCGCGTCGCCCATGACGTG 45258
Query 145731 GATGAAG-TCCCCGG-----GCTCG-AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCA 145783
||| | | ||||| | ||| | ||||| | | | ||||| ||||| |
Sbjct 45257 CGTGAGGCTTCCCGGCACCAGATCGCACGCCCGCG-------CAATCATGTGCGTCAGGA 45205
Query 145784 GGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACA 145843
| | ||||||||| |||||||||||||| || || |||||||| | || ||||||||||
Sbjct 45204 GCGCGTAGCTGGCAATGTTGAAGGGCACGCCGAGTCCCATGTCGCAGGACCGCTGGTACA 45145
Query 145844 GCTGGCAG 145851
||||||||
Sbjct 45144 GCTGGCAG 45137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590056324335040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |