Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1058 178 1e-39 seq791 149 6e-31 seq1741 127 2e-24 seq1821 123 3e-23 >seq1058 Length=49244 Score = 178 bits (196), Expect = 1e-39 Identities = 317/456 (70%), Gaps = 5/456 (1%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGC 117040 ||||||| || ||||| || |||||| || | || || | |||||| | |||| Sbjct 16573 AGAAGGCTGACTGGGCCTTGAAGTGGATCAGCGAC-GATAGCTCTTCCTTCGCCCAGCGG 16515 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 ||||| |||||||| || |||||||| ||||||| || |||||| |||| || Sbjct 16514 CTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTC 16455 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||||||||| || || ||||||||||| ||||| ||| |||||||||||||||| | Sbjct 16454 TGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGT 16395 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220 || |||||||| || |||||||||||| | ||| | || | ||| || || Sbjct 16394 GATGAGGGTCTCCACACCGACTTTGCCTGCCTCTTGTACTCTCACCTCAAGCACCGCCCT 16335 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 ||| | | | | ||| || || || || ||| || |||||| ||||| Sbjct 16334 AGCAAGCAGGTCATTGAGGACATTATCGTTGATGCCGTCAAGATTGAGCAGGAGTTCCTA 16275 Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339 ||||| || ||||| |||| ||| || || | || | | | |||| ||| ||||| Sbjct 16274 ACCGAGGCTCTGCC-TTGCGCTCTCCTCGGCATGAACTCCAACTTGATGAAGCAGTACAT 16216 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 ||||||||| |||||| | || || | | || | | || |||| |||||| | | Sbjct 16215 CGAGTTCGTTGCCGACCGTCTCTTGGTTGCTCTTGGCAACGACAAGGTCTACAAGTCTTC 16156 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCT-CCTTGG 117434 |||||| | ||||| ||| | ||||| |||||| Sbjct 16155 CAACCCCTTTGACTTCATGGAGAACATCTCCCTTGG 16120 Score = 159 bits (176), Expect = 4e-34 Identities = 209/286 (73%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||| || ||||| ||||| || |||||||||| |||||| | || || Sbjct 16975 ATCTGGCAAATGTATAAGAAGGCTGAGGCCTCTTTCTGGACCGCTGAGGAGATTGATCTC 16916 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTGA---ACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | | || |||| | ||| | |||||| Sbjct 16915 TCCAAGGATCTCCA-CGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTC 16857 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || ||||| |||||||| ||||||||||||||||||||| || || ||||| Sbjct 16856 TCACATCCTTGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGAGAACCTCGTTGAGCG 16797 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | || || ||||| | ||||| || ||||||||||| || |||||| || Sbjct 16796 CTTCTCCGGCGAAGTCCAGGTCCCTGAGGCTCGCTGCTTCTACGGTTTCCAGATCATGAT 16737 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | ||||| || | || || |||||||||||| ||| Sbjct 16736 GGAGAACATTCACTCTGAGACCTACTCCCTCCTCATCGACACTTAC 16691 >seq791 Length=44334 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || |||||| |||| || || | || Sbjct 42666 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 42607 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| ||||| |||||| | |||||| Sbjct 42606 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 42547 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| || || ||||| || |||| ||||||||| |||||||||| Sbjct 42546 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 42487 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || || || || ||||| || | || || Sbjct 42486 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 42440 >seq1741 Length=26822 Score = 127 bits (140), Expect = 2e-24 Identities = 139/182 (76%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| |||||||| |||| ||||| || | || | | | | |||| ||||| Sbjct 16479 TCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCTGATACCATCGACAACG-TCAAG 16537 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || |||| ||||| |||||||||||| | || ||||| || ||||| | ||| ||| Sbjct 16538 TCGAAGATTCAGGACAAGGAGGGCATCCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGC 16597 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || || || || |||| ||||||||| |||||||||||||||||||||| | || || Sbjct 16598 AAGCAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTC 16657 Query 40891 CA 40892 || Sbjct 16658 CA 16659 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| ||||| ||||||||| | || ||||| | | || | | | Sbjct 16753 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCG 16812 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | ||||| || |||| ||||| |||||||| ||| | |||||||| || | | Sbjct 16813 ACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTTTGA 16872 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||| || ||||| || || || || | |||||||| |||||||||||| ||||||| Sbjct 16873 TCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTATCCGACTACAACATTCAGAAGG 16932 Query 40880 AGGCCACGCTGCA 40892 || ||||||| || Sbjct 16933 AGTCCACGCTCCA 16945 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || || || | || ||||| | | Sbjct 16971 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACAATTACTTTGGAGGTCGAGTCATCA 17030 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| | ||| || || | || || ||||| || || | ||||| Sbjct 17031 GACACGATTGACAACG-TGAAGTCCAAGATCCAGGATAAGGAGGGTATTCCTCCCGACCA 17089 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || |||||||| || | |||||||| | ||||||||| Sbjct 17090 GCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACCCTGAGCGACTACAA 17149 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || ||||| || Sbjct 17150 CATCCAGAAGGAATCCACCCTTCATCTCGT 17179 >seq1821 Length=135001 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| | || ||||| || |||||| | Sbjct 45792 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 45851 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||||||| | |||||||| || | Sbjct 45852 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 45911 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || |||| ||||||||| ||||||||||||||||||| Sbjct 45912 ATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 45971 Query 40879 G 40879 | Sbjct 45972 G 45972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515201321893760