Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq1741 122 8e-23
seq791 122 8e-23
seq1821 86.0 5e-12
seq1932 82.4 7e-11
>seq1741
Length=26822
Score = 122 bits (134), Expect = 8e-23
Identities = 138/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| |||||||| || || |||||||| ||| | ||||| |||||
Sbjct 16665 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 16606
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| || || |||||| | |||||||||||||||||||| || |||||||||||||| |
Sbjct 16605 AGTTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGA 16546
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| ||| || | | ||||||||||| || | || |||
Sbjct 16545 ATCTTCGACTTGACGTTGTCGATGGTATCAGAGGACTCGACCTCGAGAGTGATGGTCTTG 16486
Query 118710 CCGGT 118714
|||||
Sbjct 16485 CCGGT 16481
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| || || || || |||||||| ||||||| ||||| ||| || ||||| ||||||
Sbjct 17167 GTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGCTGCTTTCCA 17108
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| ||||||||||| |||||||| || |||||||| || || || ||
Sbjct 17107 GCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATCTTGGACTTC 17048
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | ||||| | ||||||||| | || | || ||||| || |||||
Sbjct 17047 ACGTTGTCAATCGTGTCTGATGACTCGACCTCCAAAGTAATTGTCTTGCCAGTAAGAGTC 16988
Query 118722 TTTACAAAAATCTGCAT 118738
|| || || ||||||||
Sbjct 16987 TTCACGAAGATCTGCAT 16971
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| || ||||| || ||||||||||| ||| | ||||| ||||||
Sbjct 16951 ACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGATAGGGTGCGGCCATCCTCA 16892
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| || || ||||| |||| | ||||||||| || || || |||||||||||||| |
Sbjct 16891 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGA 16832
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| ||| || | ||||||||| | ||| | || |||
Sbjct 16831 ATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTG 16772
Query 118710 CCGGTCAGAGTTTTTAC 118726
|| || || || || ||
Sbjct 16771 CCAGTGAGGGTCTTGAC 16755
>seq791
Length=44334
Score = 122 bits (134), Expect = 8e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||||| || ||||| || || |||||||| ||| | ||||| ||||||
Sbjct 42458 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 42517
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| ||||| ||| |||| || |||||||| ||||| || || |||||||||||
Sbjct 42518 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGG 42577
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| | ||| ||||||| ||| | || |||
Sbjct 42578 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTG 42637
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| ||||| || || || || |||||||||
Sbjct 42638 CCCGTCAGGGTCTTGACGAAGATCTGCATG 42667
>seq1821
Length=135001
Score = 86.0 bits (94), Expect = 5e-12
Identities = 127/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| | ||||| ||||| ||||| || |||||| ||||
Sbjct 45970 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATC 45911
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| |||||||| ||||| || |||||||||||||| || || || || | |||
Sbjct 45910 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 45851
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| ||||| | | ||||||||| | ||| | || || || ||||| || || || |||
Sbjct 45850 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 45791
>seq1932
Length=74184
Score = 82.4 bits (90), Expect = 7e-11
Identities = 114/160 (71%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 134547 TATGTTTCAATGACGCTCTTAACGTCGTCGCCGTGAATGGCCAGAGCGACGCGCATGAGC 134606
|| || |||||||||| || ||| ||||| || ||| | | ||||| ||||||| |
Sbjct 58322 TAGGTCTCAATGACGCGCTCAACATCGTCACCCCAGATGCCGACTGCGACACGCATGATC 58263
Query 134607 ATGTGTTGGGGTCTCTCCATGATCACGTCGTCGATTTTTAACAAATATCCATTGGTGAGG 134666
||||| || |||||||| ||| | |||||| || | || ||| | |||
Sbjct 58262 ATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTCAGCAGGTATGATCTCTCCAGG 58203
Query 134667 GTTTTGAAACCGAAATATTTGTAATTGTAGTCTCTCTCGT 134706
|||||||||||||| |||| ||| ||| |||| | ||||
Sbjct 58202 GTTTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCGT 58163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433815722432992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |