Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq791 113 5e-20
seq1821 89.7 6e-13
seq1741 82.4 9e-11
>seq791
Length=44334
Score = 113 bits (124), Expect = 5e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| |||| || | ||| |||||| || || ||||| || | || || || ||
Sbjct 42452 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 42511
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| || ||||| || || ||||||||||||| || | | |||||||
Sbjct 42512 TCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTG 42571
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
||| ||| || |||| | | | |||||| ||| ||||| |||| |||||
Sbjct 42572 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATA 42631
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| |||||||| || ||||| || ||||| |||||
Sbjct 42632 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 42666
>seq1821
Length=135001
Score = 89.7 bits (98), Expect = 6e-13
Identities = 137/194 (71%), Gaps = 1/194 (1%)
Strand=Plus/Minus
Query 42982 GCAATGTG-CTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040
|||||| | || |||| || || ||||| || | || || || |||| || ||||||
Sbjct 45985 GCAATGAGACTAACCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGC 45926
Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100
|| |||||||| || | ||||||||||||| || | || |||||||||| ||| ||
Sbjct 45925 TTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTG 45866
Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160
|||| | | | ||||||| || || || || | || ||||| || |||||
Sbjct 45865 GACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTC 45806
Query 43161 AGCGTCTTTACAAA 43174
|| ||||| || ||
Sbjct 45805 AGGGTCTTCACGAA 45792
>seq1741
Length=26822
Score = 82.4 bits (90), Expect = 9e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| || || ||||| || ||| || || | || || |||||||| ||||||||
Sbjct 17161 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAG 17102
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| || ||||||||||||| || | | |||||| ||| ||| || || | |||
Sbjct 17101 ATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATCTTGGACTTCA-CGTT 17043
Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | |||||| || || || || | || || || ||||| || || ||||| ||
Sbjct 17042 GTCAATCGTGTCTGATGACTCGACCTCCAAAGTAATTGTCTTGCCAGTAAGAGTCTTCAC 16983
Query 43172 AAAGATTTGCAT 43183
||||| |||||
Sbjct 16982 GAAGATCTGCAT 16971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571797757929280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |