Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq791 122 6e-23 seq1741 109 4e-19 seq1821 102 5e-17 >seq791 Length=44334 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| |||||||| | || || ||||| |||||||||||||| Sbjct 42440 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 42499 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||| || ||||| || || |||||||||||| ||| Sbjct 42500 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 42559 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | || | |||| ||| || || Sbjct 42560 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 42619 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 42620 TCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 42666 >seq1741 Length=26822 Score = 109 bits (120), Expect = 4e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| || ||||| |||||||||||||| || ||| |||| Sbjct 16668 AGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 16609 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||| ||||||||||| |||||||| ||| ||| | || ||||||||| Sbjct 16608 TCAAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCC 16549 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | ||| | || ||||| || | |||||||| Sbjct 16548 TGAATCTTCGACTTGACGTTGTCGATGGTATCAGAGGACTCGACCTCGAGAGTGATGGTC 16489 Query 34358 TTGCCGGTGA 34367 |||||||||| Sbjct 16488 TTGCCGGTGA 16479 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||||||| ||| || | || |||| |||||| || ||||| Sbjct 17162 TTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGCTGCTTTCCAGCGAA 17103 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || |||||||||||| || | | |||||| || ||||| ||| | | Sbjct 17102 GATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATCTTGGACTTCACGTT 17043 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | |||| || | || ||||| |||| || || || ||||| || ||||| ||||| Sbjct 17042 GTCAATCGTGTCTGATGACTCGACCTCCAAAGTAATTGTCTTGCCAGTAAGAGTCTTCAC 16983 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 16982 GAAGATCTGCAT 16971 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || |||| ||| | || || ||||| |||||||||||||| Sbjct 16969 CCACCGCGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAT 16910 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||||| || || || | ||||||||||| ||| Sbjct 16909 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGA 16850 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | ||| | || ||||| Sbjct 16849 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 16790 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 || | |||||||| ||||| ||||| || || || Sbjct 16789 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 16755 >seq1821 Length=135001 Score = 102 bits (112), Expect = 5e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| |||||||||||||| || ||| |||| || | ||||||||| ||||| || Sbjct 45970 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATC 45911 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 | |||||||||||| ||| | || ||||||||| ||||| ||| | || | | Sbjct 45910 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 45851 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 |||| |||| || ||||| || | || ||||| || || || || || ||||| || Sbjct 45850 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 45792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323061069666560