Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq400 109 1e-18 seq1701 87.8 4e-12 >seq400 Length=135507 Score = 109 bits (120), Expect = 1e-18 Identities = 259/389 (67%), Gaps = 22/389 (6%) Strand=Plus/Minus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070 |||| ||| ||||||| || |||||||| ||||| || || | ||||| |||| | Sbjct 130682 TGCTCTTCTACGGTCCACCAGGAACAGGAAAGACATCTACAGTACTGGCTTTGGCTAAAG 130623 Query 254071 CCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAAC 254130 || | ||| | || || | | |||||| |||||||| || ||||| ||||| | Sbjct 130622 AACTCTACGGCCCTGAGATGATCAAATCGCGCGTACTCGAGCTCAATGCTTCCGACGAGC 130563 Query 254131 GCGGGTTGGACGTCGTCCGCGACAAGATCAAG-ACTTT-CTC-CA---AGATGTCGATTT 254184 | || | | ||||||| || ||| | ||| ||||| ||| || || || ||| Sbjct 130562 GTGGAATCTCCATCGTCCGAGAGAAGGTGAAGGACTTTGCTCGCATGCAGTTGACGAACC 130503 Query 254185 CGTCGTTCCAA--------------CCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGA 254230 || || | || ||| || || ||||||||| | | ||| |||| Sbjct 130502 CGACGAACGAATACAAGAAGAGATACCCT--TGCCCTCCTTTCAAGATTATCATCTTGGA 130445 Query 254231 CGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCA 254290 |||||| || ||||||| ||||||||| || || ||||| || |||||||| | Sbjct 130444 CGAGGCCGATTCCATGACACAAGACGCGCAGAGTGCTCTGCGCCGCACCATGGAGACATA 130385 Query 254291 CTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCT 254350 | | | ||||| ||||| || | ||||||||||| || ||||||| || || Sbjct 130384 CAGCAAGATCACGCGGTTTTGTTTGATCTGCAACTACGTCACGCGAATCATCGATCCTCT 130325 Query 254351 GGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 ||| ||| ||| |||||| || |||| Sbjct 130324 TGCTAGTCGTTGCAGCAAGTTCCGCTTCA 130296 >seq1701 Length=48026 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 115416 CTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATGAACCGCGTCGTGCT 115475 ||| | ||| |||||||| ||| |||| | ||||||| | | | ||| ||||||||| | Sbjct 16379 CTGCAGCGGCTCGATGATCTTGTTGGACTGGTTGCAGGCGAAGGCGAAGCGCGTCGTGTT 16320 Query 115476 CGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGTGTCATCGAGTCTGC 115535 ||||| | ||||| |||| ||||| ||||| || || | |||||| ||| || Sbjct 16319 GGAGTAGATTTCCATTGTCCGGCGCAGGGCCTGCTGGGCGCCTGATGTCATGCTGTCGGC 16260 Query 115536 CTCGTCGAGAACGACAATCTT 115556 ||||||||| | ||| | ||| Sbjct 16259 CTCGTCGAGGATGACGAGCTT 16239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073728208813568