Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq791 136 3e-27 seq1741 123 2e-23 >seq791 Length=44334 Score = 136 bits (150), Expect = 3e-27 Identities = 161/217 (74%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| |||||||||||| || ||| |||| || Sbjct 42458 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 42517 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| |||| ||||| |||||||| || | ||||||||||||| Sbjct 42518 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGG 42577 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||||||||| | ||| || |||||| Sbjct 42578 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTG 42637 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343 |||||||| ||||| || ||||| |||||| |||||| Sbjct 42638 CCCGTCAGGGTCTTGACGAAGATCTGCATGATTGCCT 42674 >seq1741 Length=26822 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| |||| |||| | || ||||| || ||||| ||||| Sbjct 17161 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAG 17102 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||| ||||||||||| | ||||||||| ||| || || ||| | || Sbjct 17101 ATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATCTTGGACTTCA-CGTT 17043 Query 45266 GCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | || | |||| ||| ||||||| ||||| |||||||| || ||||||||||| Sbjct 17042 GTCAATCGTGTCTGATGACTCGACCTCCAAAGTAATTGTCTTGCCAGTAAGAGTCTTCAC 16983 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 16982 GAAGATCTGCAT 16971 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| |||||| |||||||||||||||||||||| || ||| | || || Sbjct 16951 ACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGATAGGGTGCGGCCATCCTCA 16892 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || || || ||||| ||||| ||||| || || | |||||||||||| | Sbjct 16891 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGA 16832 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | || | ||| ||||| | ||| || |||||| Sbjct 16831 ATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTG 16772 Query 45308 CCCGTCAGAGTCTTCAC 45324 || || || ||||| || Sbjct 16771 CCAGTGAGGGTCTTGAC 16755 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||||||| || ||| |||| || Sbjct 16665 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 16606 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || ||||| || | ||||| || ||||| || | |||||||||||| | Sbjct 16605 AGTTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGA 16546 Query 45248 ATTTT 45252 || || Sbjct 16545 ATCTT 16541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395061833618296