Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1932 356 2e-93 seq1058 136 4e-27 seq1741 109 5e-19 seq791 107 2e-18 seq1821 82.4 7e-11 >seq1932 Length=74184 Score = 356 bits (394), Expect = 2e-93 Identities = 1197/1850 (65%), Gaps = 42/1850 (2%) Strand=Plus/Minus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 || || || || |||||||||||||| ||||| | |||||| | ||||| || Sbjct 59978 GTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAATGCATGCTG 59919 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || |||| | ||||| | |||| ||||| ||| ||||| Sbjct 59918 GTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATG 59859 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324 || || || |||||||| ||||| | | | || ||| || |||||||| |||||| Sbjct 59858 AAGGCACCACGATCGGCAGCCATCTGGACAACGGTGCGCTGGGAGATTTCCCAGACGGTC 59799 Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTG 22384 |||||||| | ||| ||| || || ||| |||| ||||| || || | | Sbjct 59798 TTGTACAGAGCCTTGACCTCGGCGGGAATGTTGGGGATGTTCTGAACGGAACCATTCTCG 59739 Query 22385 TGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACC 22444 ||||| || || || | |||| ||| || || ||| || | ||| || | | Sbjct 59738 GCAATGATACGGTTCTTCATGGCATCGGACCATAAGCCCATGTCGACGAGATCCTTAAGC 59679 Query 22445 AGATGACGGTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGA 22503 || |||| || || || |||||||||| ||||| | ||||| ||||| |||||||| Sbjct 59678 AGCCAGGGGTTGACAACCTGGAACTCGCCGG-CAAGAACACGGCGCTGGTAGATGTTGGA 59620 Query 22504 TGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCAT 22563 ||| | || ||||| | || ||||| |||| ||||| | || || || || ||||| Sbjct 59619 AGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCAT 59560 Query 22564 CGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATC 22621 || || | || || ||| | | ||||| | |||| | | || ||| || Sbjct 59559 GGGAGCAACAAGCAGACTGTTGCGAACACCGTGTTCCTTGATCTGCTCCTTCAGAGAGTC 59500 Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCA--ACACGC 22679 ||||||||| || || || ||| | ||||| |||||| ||||| || | | || | Sbjct 59499 --CCAGTCCCAGAGGTCAGAGGGCTTGACATT---CCACATGTCGTACTGAAGGATACCC 59445 Query 22680 CGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTT--- 22736 | || ||| ||| |||||||| ||| | ||| | | ||| |||| Sbjct 59444 TGGGAGATA--GGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAA 59387 Query 22737 CGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGG 22796 || | | | | | || ||| || || |||||||| || |||||||| | ||| Sbjct 59386 CGGACATGGTC---AGAGCAGCGTGGTAGATGGTCTCGAAAATCTTCTTGTTGAGATCGC 59330 Query 22797 CGGC----GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCC 22852 || || ||| ||| | ||||| || | | ||| || || || | |||| Sbjct 59329 GAGCCTCAGGAGAC----TCGAAAGGCATGCGTAGGGCAAGGAAGGCATCAGCAAGACCC 59274 Query 22853 TGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAA 22908 || || || | ||||| || |||| || || || |||| ||| || | Sbjct 59273 TGGACACCAAGGCCGATGGGACGGTGACGCATGTTG----CTGTTGCGAGCCTCAGGAAC 59218 Query 22909 AGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNN 22968 || || || ||| || | |||||| ||| | | || | | || | Sbjct 59217 GGGGTAGTGGTTGACATCAATGATCTTGTTCAGGTTGCGGACAACGACCTGAGTGACCTC 59158 Query 22969 NNNNNNNNNNTCAAAGTCGTAAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGAT 23025 | || ||||| || ||| ||||| |||| || | | ||| | Sbjct 59157 GTGAAGCTTCTGGAAATCGTAGACACCCTCGTTGTAGTCAACGAAGGTAGGCAGGGCAAG 59098 Query 23026 CGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACA 23085 ||||| | |||||||| || ||||| || || |||||| | || || || || Sbjct 59097 AGAGGCCAAGTTGCATACAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCA 59038 Query 23086 TAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATC 23145 |||||| | || || || | || |||||||||| || || || | || Sbjct 59037 GAGATTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGTC 58978 Query 23146 CTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACAT 23205 |||||| |||||| | || |||| ||||| ||| | ||||| ||| || ||| | Sbjct 58977 CTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAG 58918 Query 23206 AGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACG 23264 |||| || | | ||| || ||| |||||| ||||||||| | |||||| | Sbjct 58917 CTTCTGGGCCTTGATG-GTCTTGCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGG 58859 Query 23265 CGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324 | || || || | ||||| ||||| ||||||||||| | | | ||||||||||| Sbjct 58858 CCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGACACATGAGGG 58799 Query 23325 TCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384 |||| | || || || || | |||| || ||||| || ||||| || ||| || Sbjct 58798 TCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGA 58739 Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444 | || || || || || |||||||| |||||| |||||| ||| |||| || || | Sbjct 58738 AAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCAA 58679 Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGC 23504 | || || || ||||| ||||| ||||| | ||| || || || || | ||| ||||| | Sbjct 58678 AGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCAC 58619 Query 23505 CCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGG 23564 |||| |||||||| || || ||||||||| | || | ||||| || | || |||||| | Sbjct 58618 CCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTAG 58559 Query 23565 ACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAAC 23624 | | |||| ||| || | | || || | || || | ||| ||| || || Sbjct 58558 AGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTGAGAC 58499 Query 23625 CTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCT 23684 | ||||| || || || || ||||| ||||| || || ||||||||||| |||| Sbjct 58498 CAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCT 58439 Query 23685 CGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG-GGCGTA 23743 | ||| ||| || || | |||| | ||| || ||||||| || || || || ||| Sbjct 58438 CAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAGGGGTA 58380 Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTAC 23803 |||| ||| ||||| ||| |||||| || ||| | | ||||| || ||||| Sbjct 58379 CCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAG 58320 Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863 || || ||| || |||| || || || || |||| ||||| ||||| |||||| Sbjct 58319 GTCTCAATGACGCGCTCAACATCGTCACCCCAGATGCCGACTGCGACACGCATGATCATG 58260 Query 23864 TATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTT 23923 | || ||||||||| | | ||||| | || | ||| ||||| | | || ||| Sbjct 58259 TGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTCAGCAGGTATGATCTCTCCAGGGTT 58200 Query 23924 TTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || || || || | ||||| ||||| || |||| || ||||| || Sbjct 58199 TTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCAGA 58150 >seq1058 Length=49244 Score = 136 bits (150), Expect = 4e-27 Identities = 276/406 (68%), Gaps = 8/406 (2%) Strand=Plus/Minus Query 57897 ACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG 57956 ||| | ||||| || ||||||||| || ||| | | || ||||| | || | Sbjct 16592 ACAGTCCCCGCCATTCGCAAGAAGGCTGACTGGGCCTTGAAGTGGATCAGCGACGATAGC 16533 Query 57957 GCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGC 58016 | | |||||| || |||| | || |||||||| ||||| ||||| ||||| || Sbjct 16532 TCTTCCTTCGCCCAGCGGCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGGT 16473 Query 58017 AGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGC 58076 ||| || | || || ||| | ||||| || || || |||||||| ||||| || | Sbjct 16472 GCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCC 16413 Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136 |||||| | || || || || ||||||||||| || || ||||| ||||| |||||||| Sbjct 16412 AACGAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCTTGTACTCT 16353 Query 58137 CACATTGTCAATAAACCGAC---GC-GGGATCGCATCTTGGACATTATCACCGAGGCGGT 58192 ||| |||| |||| | || | | ||| |||||||||| || || || Sbjct 16352 CAC---CTCAA-GCACCGCCCTAGCAAGCAGGTCATTGAGGACATTATCGTTGATGCCGT 16297 Query 58193 CGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAA 58252 | ||| || | ||||| | ||||| || || || || | ||||| |||||| Sbjct 16296 CAAGATTGAGCAGGAGTTCCTAACCGAGGCTCTGCCTTGCGCTCTCCTCGGCATGAACTC 16237 Query 58253 TGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTG 58298 | |||||| ||||||| ||||| ||||||||| | || ||| Sbjct 16236 CAACTTGATGAAGCAGTACATCGAGTTCGTTGCCGACCGTCTCTTG 16191 >seq1741 Length=26822 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || || || | || || || | || Sbjct 16971 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACAATTACTTTGGAGGTCGAGTCATCA 17030 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||| ||||| || | || ||||||||| Sbjct 17031 GACACGATTGACAACGTGAAGTCCAAGATCCAGGATAAGGAGGGTATTCCTCCCGACCAG 17090 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| ||||||| | || ||||||| || ||| Sbjct 17091 CAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACCCTGAGCGACTACAAC 17150 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || ||||| || |||||||| ||||| | || | |||||| Sbjct 17151 ATCCAGAAGGAATCCACCCTTCATCTCGTACTCCGTCTTCGTGGCGGT 17198 >seq791 Length=44334 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| ||||| ||||| || |||||| |||| || || Sbjct 42671 CAATCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGT 42612 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 ||||||||| |||| | ||||| | || ||||||||| || | || |||| Sbjct 42611 CGTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCG 42552 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || ||||| || || ||| | || ||| || | ||| | Sbjct 42551 ACCAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACT 42492 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || || || || || || ||||| || | ||| | || |||| Sbjct 42491 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTA 42438 >seq1821 Length=135001 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 |||||| ||||| ||||| || || || || ||| | || || || | ||||||| | Sbjct 45791 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGAT 45850 Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320 ||| | ||||| | || ||||||||| ||| | || |||||||||||||| | Sbjct 45851 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTT 45910 Query 31321 AATATTCGCTGGCAAACAGTTGGAAGAC 31348 || ||||||||||| ||| | || ||| Sbjct 45911 GATCTTCGCTGGCAAGCAGCTTGAGGAC 45938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445750931905920