Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 356 2e-93
seq1058 136 4e-27
seq1741 109 5e-19
seq791 107 2e-18
seq1821 82.4 7e-11
>seq1932
Length=74184
Score = 356 bits (394), Expect = 2e-93
Identities = 1197/1850 (65%), Gaps = 42/1850 (2%)
Strand=Plus/Minus
Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204
|| || || || |||||||||||||| ||||| | |||||| | ||||| ||
Sbjct 59978 GTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAATGCATGCTG 59919
Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264
|| | || || |||| | ||||| | |||| ||||| ||| |||||
Sbjct 59918 GTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATG 59859
Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324
|| || || |||||||| ||||| | | | || ||| || |||||||| ||||||
Sbjct 59858 AAGGCACCACGATCGGCAGCCATCTGGACAACGGTGCGCTGGGAGATTTCCCAGACGGTC 59799
Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTG 22384
|||||||| | ||| ||| || || ||| |||| ||||| || || | |
Sbjct 59798 TTGTACAGAGCCTTGACCTCGGCGGGAATGTTGGGGATGTTCTGAACGGAACCATTCTCG 59739
Query 22385 TGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACC 22444
||||| || || || | |||| ||| || || ||| || | ||| || | |
Sbjct 59738 GCAATGATACGGTTCTTCATGGCATCGGACCATAAGCCCATGTCGACGAGATCCTTAAGC 59679
Query 22445 AGATGACGGTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGA 22503
|| |||| || || || |||||||||| ||||| | ||||| ||||| ||||||||
Sbjct 59678 AGCCAGGGGTTGACAACCTGGAACTCGCCGG-CAAGAACACGGCGCTGGTAGATGTTGGA 59620
Query 22504 TGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCAT 22563
||| | || ||||| | || ||||| |||| ||||| | || || || || |||||
Sbjct 59619 AGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCAT 59560
Query 22564 CGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATC 22621
|| || | || || ||| | | ||||| | |||| | | || ||| ||
Sbjct 59559 GGGAGCAACAAGCAGACTGTTGCGAACACCGTGTTCCTTGATCTGCTCCTTCAGAGAGTC 59500
Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCA--ACACGC 22679
||||||||| || || || ||| | ||||| |||||| ||||| || | | || |
Sbjct 59499 --CCAGTCCCAGAGGTCAGAGGGCTTGACATT---CCACATGTCGTACTGAAGGATACCC 59445
Query 22680 CGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTT--- 22736
| || ||| ||| |||||||| ||| | ||| | | ||| ||||
Sbjct 59444 TGGGAGATA--GGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAA 59387
Query 22737 CGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGG 22796
|| | | | | | || ||| || || |||||||| || |||||||| | |||
Sbjct 59386 CGGACATGGTC---AGAGCAGCGTGGTAGATGGTCTCGAAAATCTTCTTGTTGAGATCGC 59330
Query 22797 CGGC----GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCC 22852
|| || ||| ||| | ||||| || | | ||| || || || | ||||
Sbjct 59329 GAGCCTCAGGAGAC----TCGAAAGGCATGCGTAGGGCAAGGAAGGCATCAGCAAGACCC 59274
Query 22853 TGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAA 22908
|| || || | ||||| || |||| || || || |||| ||| || |
Sbjct 59273 TGGACACCAAGGCCGATGGGACGGTGACGCATGTTG----CTGTTGCGAGCCTCAGGAAC 59218
Query 22909 AGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNN 22968
|| || || ||| || | |||||| ||| | | || | | || |
Sbjct 59217 GGGGTAGTGGTTGACATCAATGATCTTGTTCAGGTTGCGGACAACGACCTGAGTGACCTC 59158
Query 22969 NNNNNNNNNNTCAAAGTCGTAAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGAT 23025
| || ||||| || ||| ||||| |||| || | | ||| |
Sbjct 59157 GTGAAGCTTCTGGAAATCGTAGACACCCTCGTTGTAGTCAACGAAGGTAGGCAGGGCAAG 59098
Query 23026 CGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACA 23085
||||| | |||||||| || ||||| || || |||||| | || || || ||
Sbjct 59097 AGAGGCCAAGTTGCATACAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCA 59038
Query 23086 TAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATC 23145
|||||| | || || || | || |||||||||| || || || | ||
Sbjct 59037 GAGATTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGTC 58978
Query 23146 CTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACAT 23205
|||||| |||||| | || |||| ||||| ||| | ||||| ||| || ||| |
Sbjct 58977 CTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAG 58918
Query 23206 AGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACG 23264
|||| || | | ||| || ||| |||||| ||||||||| | |||||| |
Sbjct 58917 CTTCTGGGCCTTGATG-GTCTTGCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGG 58859
Query 23265 CGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324
| || || || | ||||| ||||| ||||||||||| | | | |||||||||||
Sbjct 58858 CCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGACACATGAGGG 58799
Query 23325 TCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384
|||| | || || || || | |||| || ||||| || ||||| || ||| ||
Sbjct 58798 TCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGA 58739
Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444
| || || || || || |||||||| |||||| |||||| ||| |||| || || |
Sbjct 58738 AAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCAA 58679
Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGC 23504
| || || || ||||| ||||| ||||| | ||| || || || || | ||| ||||| |
Sbjct 58678 AGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCAC 58619
Query 23505 CCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGG 23564
|||| |||||||| || || ||||||||| | || | ||||| || | || |||||| |
Sbjct 58618 CCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTAG 58559
Query 23565 ACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAAC 23624
| | |||| ||| || | | || || | || || | ||| ||| || ||
Sbjct 58558 AGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTGAGAC 58499
Query 23625 CTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCT 23684
| ||||| || || || || ||||| ||||| || || ||||||||||| ||||
Sbjct 58498 CAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCT 58439
Query 23685 CGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG-GGCGTA 23743
| ||| ||| || || | |||| | ||| || ||||||| || || || || |||
Sbjct 58438 CAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAGGGGTA 58380
Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTAC 23803
|||| ||| ||||| ||| |||||| || ||| | | ||||| || |||||
Sbjct 58379 CCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAG 58320
Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863
|| || ||| || |||| || || || || |||| ||||| ||||| ||||||
Sbjct 58319 GTCTCAATGACGCGCTCAACATCGTCACCCCAGATGCCGACTGCGACACGCATGATCATG 58260
Query 23864 TATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTT 23923
| || ||||||||| | | ||||| | || | ||| ||||| | | || |||
Sbjct 58259 TGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTCAGCAGGTATGATCTCTCCAGGGTT 58200
Query 23924 TTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973
|| || || || || | ||||| ||||| || |||| || ||||| ||
Sbjct 58199 TTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCAGA 58150
>seq1058
Length=49244
Score = 136 bits (150), Expect = 4e-27
Identities = 276/406 (68%), Gaps = 8/406 (2%)
Strand=Plus/Minus
Query 57897 ACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG 57956
||| | ||||| || ||||||||| || ||| | | || ||||| | || |
Sbjct 16592 ACAGTCCCCGCCATTCGCAAGAAGGCTGACTGGGCCTTGAAGTGGATCAGCGACGATAGC 16533
Query 57957 GCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGC 58016
| | |||||| || |||| | || |||||||| ||||| ||||| ||||| ||
Sbjct 16532 TCTTCCTTCGCCCAGCGGCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGGT 16473
Query 58017 AGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGC 58076
||| || | || || ||| | ||||| || || || |||||||| ||||| || |
Sbjct 16472 GCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCC 16413
Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136
|||||| | || || || || ||||||||||| || || ||||| ||||| ||||||||
Sbjct 16412 AACGAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCTTGTACTCT 16353
Query 58137 CACATTGTCAATAAACCGAC---GC-GGGATCGCATCTTGGACATTATCACCGAGGCGGT 58192
||| |||| |||| | || | | ||| |||||||||| || || ||
Sbjct 16352 CAC---CTCAA-GCACCGCCCTAGCAAGCAGGTCATTGAGGACATTATCGTTGATGCCGT 16297
Query 58193 CGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAA 58252
| ||| || | ||||| | ||||| || || || || | ||||| ||||||
Sbjct 16296 CAAGATTGAGCAGGAGTTCCTAACCGAGGCTCTGCCTTGCGCTCTCCTCGGCATGAACTC 16237
Query 58253 TGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTG 58298
| |||||| ||||||| ||||| ||||||||| | || |||
Sbjct 16236 CAACTTGATGAAGCAGTACATCGAGTTCGTTGCCGACCGTCTCTTG 16191
>seq1741
Length=26822
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| |||||||| || ||||| || || || | || || || | ||
Sbjct 16971 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACAATTACTTTGGAGGTCGAGTCATCA 17030
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || | || ||| ||||| || | || |||||||||
Sbjct 17031 GACACGATTGACAACGTGAAGTCCAAGATCCAGGATAAGGAGGGTATTCCTCCCGACCAG 17090
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || |||||||| || ||| ||||||| | || ||||||| || |||
Sbjct 17091 CAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACCCTGAGCGACTACAAC 17150
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|| || || ||||| || |||||||| ||||| | || | ||||||
Sbjct 17151 ATCCAGAAGGAATCCACCCTTCATCTCGTACTCCGTCTTCGTGGCGGT 17198
>seq791
Length=44334
Score = 107 bits (118), Expect = 2e-18
Identities = 164/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
||| |||||| || ||||| ||||| ||||| ||||| || |||||| |||| || ||
Sbjct 42671 CAATCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGT 42612
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
||||||||| |||| | ||||| | || ||||||||| || | || ||||
Sbjct 42611 CGTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCG 42552
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||||| || || ||||| || || ||| | || ||| || | ||| |
Sbjct 42551 ACCAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACT 42492
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
| ||||| || || || || || || || ||||| || | ||| | || ||||
Sbjct 42491 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTA 42438
>seq1821
Length=135001
Score = 82.4 bits (90), Expect = 7e-11
Identities = 107/148 (72%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260
|||||| ||||| ||||| || || || || ||| | || || || | ||||||| |
Sbjct 45791 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGAT 45850
Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320
||| | ||||| | || ||||||||| ||| | || |||||||||||||| |
Sbjct 45851 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTT 45910
Query 31321 AATATTCGCTGGCAAACAGTTGGAAGAC 31348
|| ||||||||||| ||| | || |||
Sbjct 45911 GATCTTCGCTGGCAAGCAGCTTGAGGAC 45938
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445750931905920
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