Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 152 6e-32
>seq1932
Length=74184
Score = 152 bits (168), Expect = 6e-32
Identities = 445/683 (65%), Gaps = 12/683 (2%)
Strand=Plus/Minus
Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293
|||||||| | | ||| || ||| | || |||| ||||| || ||||| || |||
Sbjct 58811 GGACACATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATC 58752
Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353
|| || || | || || || | | | ||||| || || ||||| |
Sbjct 58751 CAGAGGGCGAGGAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAG 58692
Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413
|| | |||| | | | ||| | ||||| || || | ||| ||||| | | |||||
Sbjct 58691 TCCATGAACTCAAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGA 58632
Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473
|| ||||| || ||||| || | ||| | ||| ||||| || | || | | ||| |||
Sbjct 58631 CGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGA 58572
Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT-- 63531
|| | |||||| || | || ||||| |||| |||||| ||| ||||||| |||
Sbjct 58571 ATGACACCGTTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGG 58512
Query 63532 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63591
| |||| |||| || || || ||||| || ||||| | ||||| || | |
Sbjct 58511 TGGGCGTTGA--GACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGG 58454
Query 63592 TGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63651
|||| ||||| || || ||| || || |||||| | || || || ||||| |
Sbjct 58453 TGTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCT 58394
Query 63652 GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63711
|| ||| || || || || || | || || || ||||| || || | || |
Sbjct 58393 GGCACTGAGGGGTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGG 58334
Query 63712 AAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACT 63767
| | || ||||| |||||||| | || | ||| || |||| || |||
Sbjct 58333 ACATGAGGTTGTAGGTCTCAATGACGCGCTCAACATCGTCACCCCAGATG----CCGACT 58278
Query 63768 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAG 63827
||||||||||| | ||||||||| ||||| || |||| ||| || | |||| || |
Sbjct 58277 GCGACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTCAGCAGG 58218
Query 63828 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 63887
|| ||| | |||| ||||| ||||| || || | ||| ||||| || ||||| | |
Sbjct 58217 TATGATCTCTCCAGGGTTTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACA 58158
Query 63888 ATAACCGAATTGAGCTTATCCTT 63910
|| | || | ||||| |||||
Sbjct 58157 ATGGCAGAGTCGAGCTCCTCCTT 58135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629795745329280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |