Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1932 152 6e-32 >seq1932 Length=74184 Score = 152 bits (168), Expect = 6e-32 Identities = 445/683 (65%), Gaps = 12/683 (2%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 |||||||| | | ||| || ||| | || |||| ||||| || ||||| || ||| Sbjct 58811 GGACACATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATC 58752 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || || || | || || || | | | ||||| || || ||||| | Sbjct 58751 CAGAGGGCGAGGAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAG 58692 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 || | |||| | | | ||| | ||||| || || | ||| ||||| | | ||||| Sbjct 58691 TCCATGAACTCAAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGA 58632 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || ||||| || ||||| || | ||| | ||| ||||| || | || | | ||| ||| Sbjct 58631 CGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGA 58572 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT-- 63531 || | |||||| || | || ||||| |||| |||||| ||| ||||||| ||| Sbjct 58571 ATGACACCGTTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGG 58512 Query 63532 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63591 | |||| |||| || || || ||||| || ||||| | ||||| || | | Sbjct 58511 TGGGCGTTGA--GACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGG 58454 Query 63592 TGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63651 |||| ||||| || || ||| || || |||||| | || || || ||||| | Sbjct 58453 TGTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCT 58394 Query 63652 GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63711 || ||| || || || || || | || || || ||||| || || | || | Sbjct 58393 GGCACTGAGGGGTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGG 58334 Query 63712 AAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACT 63767 | | || ||||| |||||||| | || | ||| || |||| || ||| Sbjct 58333 ACATGAGGTTGTAGGTCTCAATGACGCGCTCAACATCGTCACCCCAGATG----CCGACT 58278 Query 63768 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAG 63827 ||||||||||| | ||||||||| ||||| || |||| ||| || | |||| || | Sbjct 58277 GCGACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTCAGCAGG 58218 Query 63828 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 63887 || ||| | |||| ||||| ||||| || || | ||| ||||| || ||||| | | Sbjct 58217 TATGATCTCTCCAGGGTTTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACA 58158 Query 63888 ATAACCGAATTGAGCTTATCCTT 63910 || | || | ||||| ||||| Sbjct 58157 ATGGCAGAGTCGAGCTCCTCCTT 58135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629795745329280