Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1932 140 4e-28 >seq1932 Length=74184 Score = 140 bits (154), Expect = 4e-28 Identities = 356/539 (66%), Gaps = 12/539 (2%) Strand=Plus/Minus Query 66171 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 66230 ||||| || || | ||| ||||| | | ||||| || ||||| || ||||| || | | Sbjct 58667 TGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACG 58608 Query 66231 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTG 66290 || | ||| ||||| || | || | | ||| ||||| | ||| || || || || ||| Sbjct 58607 TAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTAGAGGTGCCGTTG 58548 Query 66291 GTCCCGGAGATATAGCTTCCACTTGCACGAATAT--TACTAATTGATAGACCTATTCCCC 66348 || |||| |||||| ||| | ||||| ||| | |||| |||| || || | Sbjct 58547 GTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTGA--GACCAATGCCAC 58490 Query 66349 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 66408 | ||||| || ||||| | ||||| || | || || ||||| ||||| || | Sbjct 58489 CAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCAATGGAGT 58430 Query 66409 CATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 66468 | ||| |||||| | || || || ||||| ||| || || || || || | Sbjct 58429 CTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCGGCGTTGA 58370 Query 66469 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 66528 | | || || || ||||| || || | || || | || ||||| |||||||| Sbjct 58369 AGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGTCTCAATGA 58310 Query 66529 CTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 66584 | || | ||| || |||| || |||||||||||||| | ||||||||| Sbjct 58309 CGCGCTCAACATCGTCACCCCAGATG----CCGACTGCGACACGCATGATCATGTGCTGC 58254 Query 66585 GGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 66644 ||||| || | |||||| || | |||| || ||| ||| | |||| ||||| ||| Sbjct 58253 GGTCTCTCGGCAATCTTGCCGTCGAGCTTCAGCAGGTATGATCTCTCCAGGGTTTTGAAA 58194 Query 66645 CCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 66703 || || || | ||| ||||| || ||||| | ||| | |||| ||| | ||||| Sbjct 58193 CCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCAGAGTCGAGCTCCTCCTT 58135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658149961403840