Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 140 4e-28
>seq1932
Length=74184
Score = 140 bits (154), Expect = 4e-28
Identities = 356/539 (66%), Gaps = 12/539 (2%)
Strand=Plus/Minus
Query 66171 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 66230
||||| || || | ||| ||||| | | ||||| || ||||| || ||||| || | |
Sbjct 58667 TGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACG 58608
Query 66231 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTG 66290
|| | ||| ||||| || | || | | ||| ||||| | ||| || || || || |||
Sbjct 58607 TAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTAGAGGTGCCGTTG 58548
Query 66291 GTCCCGGAGATATAGCTTCCACTTGCACGAATAT--TACTAATTGATAGACCTATTCCCC 66348
|| |||| |||||| ||| | ||||| ||| | |||| |||| || || |
Sbjct 58547 GTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTGA--GACCAATGCCAC 58490
Query 66349 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 66408
| ||||| || ||||| | ||||| || | || || ||||| ||||| || |
Sbjct 58489 CAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCAATGGAGT 58430
Query 66409 CATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 66468
| ||| |||||| | || || || ||||| ||| || || || || || |
Sbjct 58429 CTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCGGCGTTGA 58370
Query 66469 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 66528
| | || || || ||||| || || | || || | || ||||| ||||||||
Sbjct 58369 AGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGTCTCAATGA 58310
Query 66529 CTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 66584
| || | ||| || |||| || |||||||||||||| | |||||||||
Sbjct 58309 CGCGCTCAACATCGTCACCCCAGATG----CCGACTGCGACACGCATGATCATGTGCTGC 58254
Query 66585 GGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 66644
||||| || | |||||| || | |||| || ||| ||| | |||| ||||| |||
Sbjct 58253 GGTCTCTCGGCAATCTTGCCGTCGAGCTTCAGCAGGTATGATCTCTCCAGGGTTTTGAAA 58194
Query 66645 CCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 66703
|| || || | ||| ||||| || ||||| | ||| | |||| ||| | |||||
Sbjct 58193 CCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCAGAGTCGAGCTCCTCCTT 58135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658149961403840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |