Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1932 163 4e-35 seq1058 140 5e-28 >seq1932 Length=74184 Score = 163 bits (180), Expect = 4e-35 Identities = 307/446 (69%), Gaps = 4/446 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| ||||| | || ||||||||||| || Sbjct 58615 CAGGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATCTACCTTGAGCCTTGGCACGCCGAT 58674 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || || || ||||||| ||| ||| || |||| || || | ||| Sbjct 58675 GTCTTTGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCTCGTGAC 58734 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || |||||| | || ||| ||||||||||| | ||| | | | | | Sbjct 58735 CTTTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAACGCCGAA 58794 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| ||| ||||| ||| || || ||||| ||| | || |||| ||||| ||||| Sbjct 58795 TGGACCCTCATGTGTCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACGGCGAGGAGTTC 58854 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174 |||||| |||| | ||||||| || ||| | || |||| | || | || | Sbjct 58855 GAGGCCTTGTACGAGAAGTACGAGCGCGAAGGCAAGGGTCGCAAGACCA-TCAAGGC-CC 58912 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| || ||| | |||||| | ||||||| ||||| || | || | ||| || | Sbjct 58913 AGAAGCTTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGGCAACCCCTTCATGCTTT 58972 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 ||||||| ||| ||| ||||| |||||||| || | || |||||| |||||| Sbjct 58973 ACAAGGACGCCGCGAACCGCAAGAGCAACCAGAAGAACCTCGGAACCATCCGCAGCTCCA 59032 Query 97294 ATCTGTGCACGGAAATTGTAGAGTAC 97319 |||| ||||| || || | |||||| Sbjct 59033 ATCTCTGCACTGAGATCATTGAGTAC 59058 >seq1058 Length=49244 Score = 140 bits (154), Expect = 5e-28 Identities = 347/518 (67%), Gaps = 29/518 (6%) Strand=Plus/Minus Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAA 125407 ||| || || | || || || |||||| | |||| | ||||||| ||||| | Sbjct 16593 CACAGTCCCCGCCATTCGCAAGAAGGCTGACTGGGCCTTGAAGTGGATCAGCGACGATAG 16534 Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 ||||| | |||| | | ||||| || |||||||| || ||||| |||||||| || Sbjct 16533 CTCTTCCTTCGCCCAGCGGCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGG 16474 Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 | || || ||||||| |||||||||||||| || ||||||||||| ||||| | Sbjct 16473 TGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTC 16414 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT-TTC 125586 |||||| | || || || || ||||| || ||| ||||||||| || ||| || Sbjct 16413 CAACGAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCTTGTACTC 16354 Query 125587 GCAACT--ATCTGCGTCCCGAG--TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTA 125642 || || | | || ||| || |||| || || ||| ||| | | || Sbjct 16353 TCACCTCAAGCACCG-CCCTAGCAAGCAGGTC-----AT--TGAGGACATTATCGTT--- 16305 Query 125643 ACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATT 125702 |||||||| | ||| || || ||||| |||||||| | || || | | | Sbjct 16304 ---GATGCCGTCAAGATTGAGCAGGAGTTCCTAACCGAGGCTCTGCCTTGCGCTCTCCTC 16248 Query 125703 GGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTAC 125762 |||||||||| ||| | ||| ||||||| ||||| || || || ||||| || Sbjct 16247 GGCATGAACTCCAACTTGATGAAGCAGTACATCGAGTTCGTTGCCGACCGTCTCTTG--- 16191 Query 125763 GAGTTG--ATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817 |||| ||||| || |||| | ||||| | || |||||||| |||||| | Sbjct 16190 --GTTGCTCTTGGCAACGACAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGA 16133 Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 ||| || || | || ||||||||||| || |||||| Sbjct 16132 ACATCTCCCTTGGCGGCAAGACCAACTTCTTTGAGAAG 16095 Score = 116 bits (128), Expect = 5e-21 Identities = 207/292 (71%), Gaps = 10/292 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| ||||||| || |||||| ||||||| || ||||| | || ||| | ||||| Sbjct 16975 ATCTGGCAAATGTATAAGAAGGCTGAGGCCTCTTTCTGGACCGCTGAGGAGATTGATCTC 16916 Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 |||||||| || |||| ||| | | | | | || || |||| | || || || Sbjct 16915 TCCAAGGATCTCCACGACTGGAACAACAAGATCAAC-GATGATGAGAAGTACTTCATCTC 16857 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196 ||||| | |||||||| |||| ||||| || ||||||||||| || || ||||| | Sbjct 16856 TCACATCCTTGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGAGAACCTCGTTGA-GC 16798 Query 125197 GATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 | | |||| | | | ||| | || |||| ||| ||||| ||||| ||||| |||| Sbjct 16797 GCT--TCTCCGGCGAAGTCCAGGTCCCTGAGG-CTCGCTGCTTCTACGGTTTCCAGATCA 16741 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 |||| |||||| | ||||| || | ||||| || || |||| ||||| Sbjct 16740 TGATGGAGAACATTCACTCTGAGACCTACTCCCTCCTCATCGACACTTACAT 16689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741033485245760