Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1741 109 1e-18
>seq1741
Length=26822
Score = 109 bits (120), Expect = 1e-18
Identities = 135/185 (73%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| || ||||| ||||| || | || || || ||||| || |||
Sbjct 16939 GTGGACTCCTTCTGAATGTTGTAGTCGGATAGGGTGCGGCCATCCTCAAGTTGCTTGCCA 16880
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | | ||| || ||||| || || || || || ||||||||||| | ||
Sbjct 16879 GCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTG 16820
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | |||||| || || ||||| || || || ||||| ||||| || ||
Sbjct 16819 ACATTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 16760
Query 104543 TTTAC 104547
|| ||
Sbjct 16759 TTGAC 16755
Score = 96.9 bits (106), Expect = 8e-15
Identities = 125/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || ||||| || || ||||| || || || | ||||| || ||||| || |||
Sbjct 16653 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCA 16594
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| || | ||| ||||| || || || || || || ||||||||||| | ||
Sbjct 16593 GCGAAAATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTG 16534
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
|| || || | |||||| | || ||||| || || || ||||| || ||
Sbjct 16533 ACGTTGTCGATGGTATCAGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 16481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151357447637408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |