Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_005336.1
Length=139962
Score E
Sequences producing significant alignments: (Bits) Value
seq682 82.4 7e-11
>seq682
Length=146227
Score = 82.4 bits (90), Expect = 7e-11
Identities = 116/163 (71%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 5327 ATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAAC 5386
|| ||||| || || | ||| |||| ||||||||||| ||| || ||| ||
Sbjct 29539 ATGAGCTGGGCGATGCGGTCGCCCTCGGCGACCTCAAAGTCCGTGTCGGCGTGGTTGAAG 29598
Query 5387 AGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATA 5446
|| | ||| ||| | ||| |||||||| ||||||| ||||| |||||| ||||||
Sbjct 29599 AGGAGGACCTTGACCTGGCCGCGGTAGTCGGCGTCGATGACGCCGGCGCCCGTGTCGATG 29658
Query 5447 AAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGT 5489
|||| ||| || |||||||| || || || | ||| ||||
Sbjct 29659 AAGTTCTTGGAGGCGAGGCCGGAGCGGGGGGCGACGCGGCCGT 29701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447734863061120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |