Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 158 2e-33
>seq1932
Length=74184
Score = 158 bits (174), Expect = 2e-33
Identities = 630/982 (64%), Gaps = 20/982 (2%)
Strand=Plus/Minus
Query 62888 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTA 62946
|| ||||| ||| |||| || || || || ||||||| || | ||| || | || |
Sbjct 59106 CAGGGCAAGAGAGGCCAAGTTGCATACAGCAACCTCATCAGGGGC-GCAGTACTCAATGA 59048
Query 62947 TCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGT 63006
|||||||||| ||||| | ||| ||||| | || | || || ||||| ||
Sbjct 59047 TCTCAGTGCAGAGATTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGT 58988
Query 63007 TACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCG 63066
| || ||||| ||||| ||||| || | || || ||| |||||| || | || |
Sbjct 58987 TCGCGGCGTCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGG 58928
Query 63067 CTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATC--TCCTTTCTCTTTCGTATA 63123
| | ||| | | || | ||||| || | || | | | | ||| | |||||
Sbjct 58927 CGTACCAAA-GCTTCTGGGCCTTGATGGTC--TTGCGACCCTTGCCTTCGCGCTCGTACT 58871
Query 63124 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 63183
||||| |||||||| || || | | ||| || || || || | |
Sbjct 58870 TCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGG 58811
Query 63184 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63243
||||||| | | ||| || ||| | || |||| ||||| || ||||| || ||||
Sbjct 58810 GACACATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCC 58751
Query 63244 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63303
| || || | || || || | | | ||||| || || ||||| | |
Sbjct 58750 AGAGGGCGAGGAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGT 58691
Query 63304 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63363
| | |||| | | | ||| | ||||| || || | ||| ||||| | | ||||| |
Sbjct 58690 CCATGAACTCAAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGAC 58631
Query 63364 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63423
| ||||| || ||||| || | ||| | ||| ||||| || | || | | ||| ||||
Sbjct 58630 GCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAA 58571
Query 63424 TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATAT--T 63481
| | |||||| || | || ||||| |||| |||||| ||| ||||||| ||| |
Sbjct 58570 TGACACCGTTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGT 58511
Query 63482 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63541
|||| |||| || || || ||||| || ||||| | ||||| || | ||
Sbjct 58510 GGGCGTTGA--GACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGT 58453
Query 63542 GTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63601
||| ||||||||||| ||| || || |||||| | || || || ||||| ||
Sbjct 58452 GTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG 58393
Query 63602 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63661
| || || || || || || | || || || ||||| || || | || ||
Sbjct 58392 GCACTGAGGGGTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGA 58333
Query 63662 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTG 63717
| || ||||| |||||||| | || | ||| || |||| || ||||
Sbjct 58332 CATGAGGTTGTAGGTCTCAATGACGCGCTCAACATCGTCACCCCAGATG----CCGACTG 58277
Query 63718 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGT 63777
|||||||||| | ||||||||| ||||| || | |||||| || | |||| || ||
Sbjct 58276 CGACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTCAGCAGGT 58217
Query 63778 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 63837
| ||| | |||| ||||| ||||| || || | ||| ||||| || ||||| | ||
Sbjct 58216 ATGATCTCTCCAGGGTTTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAA 58157
Query 63838 TAACCGAGTTGAGTTTATCCTT 63859
| | |||| ||| | |||||
Sbjct 58156 TGGCAGAGTCGAGCTCCTCCTT 58135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622925583732160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |