Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1932 158 2e-33 >seq1932 Length=74184 Score = 158 bits (174), Expect = 2e-33 Identities = 630/982 (64%), Gaps = 20/982 (2%) Strand=Plus/Minus Query 62888 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTA 62946 || ||||| ||| |||| || || || || ||||||| || | ||| || | || | Sbjct 59106 CAGGGCAAGAGAGGCCAAGTTGCATACAGCAACCTCATCAGGGGC-GCAGTACTCAATGA 59048 Query 62947 TCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGT 63006 |||||||||| ||||| | ||| ||||| | || | || || ||||| || Sbjct 59047 TCTCAGTGCAGAGATTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGT 58988 Query 63007 TACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCG 63066 | || ||||| ||||| ||||| || | || || ||| |||||| || | || | Sbjct 58987 TCGCGGCGTCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGG 58928 Query 63067 CTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATC--TCCTTTCTCTTTCGTATA 63123 | | ||| | | || | ||||| || | || | | | | ||| | ||||| Sbjct 58927 CGTACCAAA-GCTTCTGGGCCTTGATGGTC--TTGCGACCCTTGCCTTCGCGCTCGTACT 58871 Query 63124 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 63183 ||||| |||||||| || || | | ||| || || || || | | Sbjct 58870 TCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGG 58811 Query 63184 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63243 ||||||| | | ||| || ||| | || |||| ||||| || ||||| || |||| Sbjct 58810 GACACATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCC 58751 Query 63244 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63303 | || || | || || || | | | ||||| || || ||||| | | Sbjct 58750 AGAGGGCGAGGAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGT 58691 Query 63304 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63363 | | |||| | | | ||| | ||||| || || | ||| ||||| | | ||||| | Sbjct 58690 CCATGAACTCAAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGAC 58631 Query 63364 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63423 | ||||| || ||||| || | ||| | ||| ||||| || | || | | ||| |||| Sbjct 58630 GCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAA 58571 Query 63424 TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATAT--T 63481 | | |||||| || | || ||||| |||| |||||| ||| ||||||| ||| | Sbjct 58570 TGACACCGTTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGT 58511 Query 63482 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63541 |||| |||| || || || ||||| || ||||| | ||||| || | || Sbjct 58510 GGGCGTTGA--GACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGT 58453 Query 63542 GTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63601 ||| ||||||||||| ||| || || |||||| | || || || ||||| || Sbjct 58452 GTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG 58393 Query 63602 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63661 | || || || || || || | || || || ||||| || || | || || Sbjct 58392 GCACTGAGGGGTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGA 58333 Query 63662 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTG 63717 | || ||||| |||||||| | || | ||| || |||| || |||| Sbjct 58332 CATGAGGTTGTAGGTCTCAATGACGCGCTCAACATCGTCACCCCAGATG----CCGACTG 58277 Query 63718 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGT 63777 |||||||||| | ||||||||| ||||| || | |||||| || | |||| || || Sbjct 58276 CGACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTCAGCAGGT 58217 Query 63778 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 63837 | ||| | |||| ||||| ||||| || || | ||| ||||| || ||||| | || Sbjct 58216 ATGATCTCTCCAGGGTTTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAA 58157 Query 63838 TAACCGAGTTGAGTTTATCCTT 63859 | | |||| ||| | ||||| Sbjct 58156 TGGCAGAGTCGAGCTCCTCCTT 58135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622925583732160