Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1932 369 1e-96 >seq1932 Length=74184 Score = 369 bits (408), Expect = 1e-96 Identities = 1134/1729 (66%), Gaps = 46/1729 (3%) Strand=Plus/Plus Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513 |||||||| ||| | |||||||| || | || ||| | |||||||| || Sbjct 58252 CCGCAGCACATGATCATGCGTGTCGCAGTCGGCATCTGGGGTGACGATGTTGAGCGCGTC 58311 Query 363514 ATTGAAACATATAAGCTTCTAAGT---GCTCGTGTATTCACGCACGCCACGCCAACAATG 363570 ||||| || || || || | || || || | ||||| |||||| | || ||| | Sbjct 58312 ATTGAGACCTACAACCTCAT--GTCCAGCAAGT-TCTTCACCCACGCCTCCCCCACACTC 58368 Query 363571 TACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGAC 363630 | ||| || || || | | | ||| ||||||| ||||| || | | |||||||| Sbjct 58369 TTCAACGCCGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAA 58428 Query 363631 GATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCA 363690 || ||||| |||||||||| ||||| || |||| || || | || ||||||| || Sbjct 58429 GACTCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCT 58488 Query 363691 GGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCA 363748 || || |||||| | | || |||| | | ||||| || | | || ||| ||||| Sbjct 58489 GGTGGCATTGGTCTCAACGC-CCACCGTATCCGTGCCACTGG-CTCCTATATTGCCGGCA 58546 Query 363749 CAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGT 363808 | || ||| || || | |||||||||||||||| || |||| ||||| | | Sbjct 58547 CCAACGGCACCTCTAACGGTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCT 58606 Query 363809 ACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATC 363868 |||||||||||||||| ||||| || || || || || || || |||||| | Sbjct 58607 ACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATCTACCTTGAGCCTTGGC 58666 Query 363869 ATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTG 363928 | |||||| | |||||||| | || | || || ||| || || ||||| | |||| Sbjct 58667 ACGCCGATGTCTTTGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCGTG 58726 Query 363929 CACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAG 363988 | ||||| || ||| || || ||| | | || | || |||||| | || ||| | Sbjct 58727 CTCGTGACCTTTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAG--AA 58784 Query 363989 GTAAGA--ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGG 364046 | | | | ||| | ||| | || || |||| || || || || | || | || Sbjct 58785 GAACGCCGAATGGACCCTCATGTGTCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACGG 58844 Query 364047 TGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAAT 364106 || || | | || | ||||| ||||| || || || |||| ||| ||||| || Sbjct 58845 CGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGCGAAGGCAAGGGTCGCAAGACCAT 58904 Query 364107 TCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTA 364166 || |||||||| |||| |||||| | || | |||| |||||| || | |||| Sbjct 58905 CAAGGCCCAGAAGCTTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGGCAACCCCTT 58964 Query 364167 TATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCA 364226 ||| | ||||| || | ||||||||| ||||||| || |||| || || || | Sbjct 58965 CATGCTTTACAAGGACGCCGCGAACCGCAAGAGCAACCAGAAGAACCTCGGAACCATCC- 59023 Query 364227 GCAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTAT 364285 |||| | || || || || ||||| ||||| ||| ||| || || ||| ||| |||| Sbjct 59024 GCAGCTCCAATCTCTGCACTGAGATCATTGAGTACTGCGCCCCTGATGAGGTTGCTGTAT 59083 Query 364286 GTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTA------AAAGATGGTACTTTTGACC 364339 | ||| | || || | || || || | || || || || ||| | || Sbjct 59084 GCAACTTGGCCTCTCTTGCCCTGCCTACCTTCGTTGACTACAACGAGGGTGTCTACGATT 59143 Query 364340 ACCAGCATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCGACAAGGTTATCGA 364397 |||| | ||| | || || || | || | | | |||| || ||||| | || || Sbjct 59144 TCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTCC--GCAACCTGAACAAGATCATTGA 59201 Query 364398 CAAGAATTATTATCCAATTCCTGAAGC-CG----AGCGTTCTAATATGCGTCATCGCCCG 364452 || | || || ||||||| || || ||| || |||||||| || || Sbjct 59202 TGTCAACCACTACCCCGTTCCTGAGGCTCGCAACAGC-----AACATGCGTCACCGTCCC 59256 Query 364453 ATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAG--ATGGCATTTG 364510 || || |||||||| ||||| || ||||| | || | ||| | | ||| | || | Sbjct 59257 ATCGGCCTTGGTGTCCAGGGTCTTGCTGATGCCTTCCT--TGCCCTACGCATGCCTTTCG 59314 Query 364511 ATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAA 364570 | || ||||| ||||| | ||| || ||| |||| || || || || || || || Sbjct 59315 AGTCTCCTGAGGCTCGCGATCTCAACAAGAAGATTTTCGAGACCATCTACCACGCTGCTC 59374 Query 364571 TGAC--TGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTC 364628 |||| || | ||| | | |||| | |||| | ||||| || || ||||| || Sbjct 59375 TGACCATG-TCCGT-TCAACTGGCCAGGGAGGAGGGTACCTACTCCACGTACGAGGGCTC 59432 Query 364629 CCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATG 364688 |||| | || ||||| | | |||| || | |||||||||| ||| |||| || || Sbjct 59433 CCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTCTG 59492 Query 364689 GAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTA 364747 | ||||||| | || | | || | ||| | || ||| ||||||| || || Sbjct 59493 GGACTGGGACTCTCTGAAGGAGCAGA-TCAAGGAACACGGTGTTCGCAACAGTCTGCTTG 59551 Query 364748 CAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAAC 364807 || |||||||| || || || ||| | |||||| | || ||||||||||||||||| | Sbjct 59552 TTGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAACAACGAGTGCTTCGAGC 59611 Query 364808 CGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATA 364867 | | || ||| | || ||||| |||||| |||| || || | ||| || || Sbjct 59612 CCTACACTTCCAACATCTACCAGCGCCGTGTTCTTGCCGGCGAGTTCCAGGTTGTCAACC 59671 Query 364868 AGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATA 364927 | || | |||||||| |||| || | ||| || |||||||||| || Sbjct 59672 CCTGGCTGCTTAAGGATCTCGTCGACATGGGCTTATGGTCCGATGCCATGAAGAACCGTA 59731 Query 364928 TCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTA 364987 |||| |||| |||||||| || |||||||| || |||| | || | ||| || Sbjct 59732 TCATTGCCGAGAATGGTTCCGTTCAGAACATCCCCAACATTCCCGCCGAGGTCAAGGCTC 59791 Query 364988 TTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCG 365047 | ||||| ||||| |||||||| ||| ||| || | | | ||||| |||||||| | Sbjct 59792 TGTACAAGACCGTCTGGGAAATCTCCCAGCGCACCGTTGTCCAGATGGCTGCCGATCGTG 59851 Query 365048 GTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCA 365107 |||| || ||| ||| |||||| | ||| | ||||| | || || | || Sbjct 59852 GTGCCTTCATCGACCAGTCCCAGTCCCTCAACATCCACATGAAGGACCCGACAATGGGCA 59911 Query 365108 AGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 || | || |||||||||| || ||||| ||||| ||||| || Sbjct 59912 AGATCACCAGCATGCATTTCGCTGGCTGGAAGCTTGGTCTCAAGACGGG 59960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303307242970832