Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1932 132 5e-26 seq791 125 7e-24 seq1821 116 3e-21 seq1741 113 4e-20 seq1058 104 2e-17 >seq1932 Length=74184 Score = 132 bits (146), Expect = 5e-26 Identities = 950/1512 (63%), Gaps = 47/1512 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| ||||||||||| | ||||| ||| || | ||| || ||| |||| Sbjct 59669 TTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAGATGTTGGAAGTGTAGGGC 59610 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| ||||||| ||| || | || | || || |||||| || || Sbjct 59609 TCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAACA 59550 Query 145178 A--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 | | | || ||||| | ||||| | |||||| | ||||| || | |||| |||| Sbjct 59549 AGCAGACTG--TTGCGAACACCGTGTTCCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCC 59492 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 | || || ||| | || | ||||||||||||||| | || |||| | | ||| Sbjct 59491 AGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGG 59432 Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCT--CCAG 145353 ||| | | | ||| | ||| |||| || | ||| | | ||| Sbjct 59431 AGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTT--GAACGGACATGGTCAG 59374 Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATC----GCTTCATCGC 145409 ||| || || || |||||| ||| | | ||||||| ||| || ||| Sbjct 59373 AGCAGCGTGGTAGATGGTCTCGAAAATCTTCTTGTTGAG----ATCGCGAGCCTCAGGAG 59318 Query 145410 TCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGA 145469 |||| | |||||||| || | || ||||| || || ||||| | || | ||||| Sbjct 59317 ACTCGAAAGGCATGCGTAGGGCAAGGAAGGCATCAGCAAGACCCTGGACACCAAGGCCGA 59258 Query 145470 TGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGA 145529 |||| || || ||||||||| | | ||| | || || | || || | Sbjct 59257 TGGGACGGTGACGCATGTTGCTGTTGCGAGCCTCAGGAACGGGGTAGTGGTTGACATCAA 59198 Query 145530 TAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAA 145589 | || || |||| ||| || || || |||| || | | | | ||| | || || Sbjct 59197 TGATCTTGTTCAGGTTGCGGACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAATCGT 59138 Query 145590 ACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTG 145649 | | |||||| | | || || || | ||| | || ||||| || || || | Sbjct 59137 AGACACCCTCGTTGTAGTCAACGAAGGTAGGCAGGGCAAGAGAGGCCAAGTTGCATACAG 59078 Query 145650 CCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGG 145709 | ||| || | | ||| ||| | | |||||| | ||| | |||| | ||||| Sbjct 59077 CAACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGATTGGAGCTGCGGATGG 59018 Query 145710 TTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTC 145769 |||| || || | ||| || || || | ||| ||||||||||| |||||| | || Sbjct 59017 TTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGTCCTTGTAAAGCATGAAGGGGT 58958 Query 145770 CGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAA--GTCCTGCGCACGCACCTG 145827 ||| ||||| ||| | ||| | ||| || ||| | ||| || | || Sbjct 58957 TGCCGGTCTCAGTCTGAGCCTCGAGGAT--GGCGTACCAAAGCTTCTGGGC-----CTTG 58905 Query 145828 CTGCTGGTAGCGGCCCT---CTTC---TTCGTATTTCCTGTAGAGCTCCTCAAACGCGGA 145881 || | | ||| |||| |||| ||||| ||| ||| | |||| ||| | Sbjct 58904 ATGGT-CTTGCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTC 58846 Query 145882 ACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTT 145941 |||||||| || | ||||||||| |||| |||||||||||| || | |||| || |||| Sbjct 58845 GCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGACACATGAGGGTCCATTCGGCGTT 58786 Query 145942 GGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGC 146001 | ||| | || ||| |||| ||| || | ||| || ||| | | ||| || || Sbjct 58785 CTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGTCACGAGC 58726 Query 146002 TTTGCAATCCTCAGCACCCATGTT-TCGCTTCAAAT-TAAGCACACTATAGATGTCCGCG 146059 | ||||| || ||| | || ||| | | | || | | ||| || ||| Sbjct 58725 ACGGACCTCCTCCTTGCCGTGGTTCTTGC-GCAAGTCCATGAACTC-AAAGACATCGGCG 58668 Query 146060 TGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACG 146116 ||||| || |||| |||| ||||| ||| || || |||||||||||||| ||| Sbjct 58667 TGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACG 58608 Query 146117 TGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTC 146176 | || | ||||||| ||||| || | |||||| ||| ||| | | |||||| Sbjct 58607 TAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTAGAGGTGCCGTTG 58548 Query 146177 GTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC- 146235 || | || || ||| || || | | || | || | || | || || Sbjct 58547 GTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTGAGACCAATGCCACCA 58488 Query 146236 GCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATG--CTA 146293 ||| | |||||| || ||||||| ||| || |||||||| || |||||| | Sbjct 58487 GCCAT-CTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCAATGGAGTC 58429 Query 146294 TCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAG 146353 | |||| ||| ||| || ||||| || ||| ||| | || || || || | Sbjct 58428 TTCCTTC--ATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCGGCGTTG 58371 Query 146354 AACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATA 146413 || | || ||| ||||| || || | || | | ||| | || || || || Sbjct 58370 AAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGTCTCAATG 58311 Query 146414 GCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGC 146473 || | || ||||| || ||||| | ||||| ||||||| |||||| || || Sbjct 58310 ACGCGCTCAACATCGTCACCCCAGATGCCGACTGCGACACGCATGATCATGTGCTGCGGT 58251 Query 146474 CGCTCCGCCA-CTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCC 146532 | ||| || | |||| ||| | ||| | || || |||||||||||||| | || Sbjct 58250 CTCTCGGCAATCTTG-CCGTCGAGCTTCAGCAGGTATGATCTCTCCAGGGTTTTGAAACC 58192 Query 146533 GAAAAATTTGTA 146544 ||| ||| ||| Sbjct 58191 GAAGTATTGGTA 58180 >seq791 Length=44334 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | ||| |||||||| || |||||||| ||| Sbjct 42440 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 42499 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| |||| | ||||||||||| || ||| Sbjct 42500 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 42559 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 42560 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 42619 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||| ||| | || || || || || || || ||||| |||||||||| Sbjct 42620 TCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGA 42668 >seq1821 Length=135001 Score = 116 bits (128), Expect = 3e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | |||||| |||||| ||||||||||| ||| ||| Sbjct 45972 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGA 45913 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || ||||||||||| || ||||| || || ||||| ||| || ||||| | | Sbjct 45912 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 45853 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||||| || | ||||| ||| ||||| || || || || |||| Sbjct 45852 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 45793 Query 131225 AA 131226 || Sbjct 45792 AA 45791 >seq1741 Length=26822 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || || || | || |||||||| ||||||||||| ||| Sbjct 16969 CCACCGCGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAT 16910 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| || |||||||| || |||| |||||||||||||| || || Sbjct 16909 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGA 16850 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||||| | || | ||||| | ||||||| Sbjct 16849 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 16790 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 || | ||| | ||| || || || || || || |||| Sbjct 16789 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 16753 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | ||| || ||||| || |||||||| |||||| Sbjct 17197 CCGCCACGAAGACGGAGTACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTC 17138 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || |||||||| || ||| |||| | |||||||||||| ||||| Sbjct 17137 AGGGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGA 17078 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| || ||| | | || | || || | ||||||| Sbjct 17077 ATACCCTCCTTATCCTGGATCTTGGACTTCACGTTGTCAATCGTGTCTGATGACTCGACC 17018 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || ||||| || ||||| |||||||| Sbjct 17017 TCCAAAGTAATTGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 16971 >seq1058 Length=49244 Score = 104 bits (114), Expect = 2e-17 Identities = 335/509 (66%), Gaps = 21/509 (4%) Strand=Plus/Minus Query 46096 CGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAG 46155 |||||||| | |||||||| |||||||||||| | | | | | | |||||| || Sbjct 16577 CGCAAGAAGGCTGACTGGGCCTTGAAGTGGATCAGCGACGATAGCTCTTCCTTCGCCCAG 16518 Query 46156 CGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATC 46215 || |||| ||||| || ||| ||||| |||| || || || ||| ||||| Sbjct 16517 CGGCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATC 16458 Query 46216 TTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATC 46274 || | |||| || | || | |||||||||| ||||| || ||||||||| || || Sbjct 16457 TTCTGGCTCAAGAAGCGTGGTC-TCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTC 16399 Query 46275 GCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGA 46334 || || ||||| || || || |||||||| || |||| | |||| ||| Sbjct 16398 CCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCTTGT-----ACTC----TCACCT 16348 Query 46335 CAAGCTTGCGCCCGA-CA--CCGTGC--TGAG--CATGTTCAAGGAGGCGGTGGCCATTG 46387 ||||| ||||| | || | | | |||| ||| || || || || |||| Sbjct 16347 CAAGC-ACCGCCCTAGCAAGCAGGTCATTGAGGACATTATCGTTGATGCCGTCAAGATTG 16289 Query 46388 AGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAA 46447 || ||||||| | || | || ||||| || || || ||||||||| | | | | Sbjct 16288 AGCAGGAGTTCCTAACCGAGGCTCTGCCTTGCGCTCTCCTCGGCATGAACTCCAACTTGA 16229 Query 46448 TGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGC 46507 || | ||||||||||| || || ||||| || | || ||| | | ||| Sbjct 16228 TGAAGCAGTACATCGAGTTCGTTGCCGACCGTCTCTTGGTTGCTCTTGGCAACGACAAG- 16170 Query 46508 ATTTTCACG-CGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACT 46566 | | || | | ||| || ||||| || ||| | ||||||||||| | ||||| || Sbjct 16169 GTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACC 16110 Query 46567 AATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 || || || || |||||||| | ||| || Sbjct 16109 AACTTCTTTGAGAAGCGCGTTGCCGACTA 16081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471996421155840