Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 132 5e-26
seq791 125 7e-24
seq1821 116 3e-21
seq1741 113 4e-20
seq1058 104 2e-17
>seq1932
Length=74184
Score = 132 bits (146), Expect = 5e-26
Identities = 950/1512 (63%), Gaps = 47/1512 (3%)
Strand=Plus/Minus
Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117
||||| ||||| ||||||||||| | ||||| ||| || | ||| || ||| ||||
Sbjct 59669 TTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAGATGTTGGAAGTGTAGGGC 59610
Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177
|| || ||||||| ||||||| ||| || | || | || || |||||| || ||
Sbjct 59609 TCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAACA 59550
Query 145178 A--ATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235
| | | || ||||| | ||||| | |||||| | ||||| || | |||| ||||
Sbjct 59549 AGCAGACTG--TTGCGAACACCGTGTTCCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCC 59492
Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295
| || || ||| | || | ||||||||||||||| | || |||| | | |||
Sbjct 59491 AGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGG 59432
Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCT--CCAG 145353
||| | | | ||| | ||| |||| || | ||| | | |||
Sbjct 59431 AGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTT--GAACGGACATGGTCAG 59374
Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATC----GCTTCATCGC 145409
||| || || || |||||| ||| | | ||||||| ||| || |||
Sbjct 59373 AGCAGCGTGGTAGATGGTCTCGAAAATCTTCTTGTTGAG----ATCGCGAGCCTCAGGAG 59318
Query 145410 TCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGA 145469
|||| | |||||||| || | || ||||| || || ||||| | || | |||||
Sbjct 59317 ACTCGAAAGGCATGCGTAGGGCAAGGAAGGCATCAGCAAGACCCTGGACACCAAGGCCGA 59258
Query 145470 TGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGA 145529
|||| || || ||||||||| | | ||| | || || | || || |
Sbjct 59257 TGGGACGGTGACGCATGTTGCTGTTGCGAGCCTCAGGAACGGGGTAGTGGTTGACATCAA 59198
Query 145530 TAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAA 145589
| || || |||| ||| || || || |||| || | | | | ||| | || ||
Sbjct 59197 TGATCTTGTTCAGGTTGCGGACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAATCGT 59138
Query 145590 ACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTG 145649
| | |||||| | | || || || | ||| | || ||||| || || || |
Sbjct 59137 AGACACCCTCGTTGTAGTCAACGAAGGTAGGCAGGGCAAGAGAGGCCAAGTTGCATACAG 59078
Query 145650 CCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGG 145709
| ||| || | | ||| ||| | | |||||| | ||| | |||| | |||||
Sbjct 59077 CAACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGATTGGAGCTGCGGATGG 59018
Query 145710 TTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTC 145769
|||| || || | ||| || || || | ||| ||||||||||| |||||| | ||
Sbjct 59017 TTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGTCCTTGTAAAGCATGAAGGGGT 58958
Query 145770 CGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAA--GTCCTGCGCACGCACCTG 145827
||| ||||| ||| | ||| | ||| || ||| | ||| || | ||
Sbjct 58957 TGCCGGTCTCAGTCTGAGCCTCGAGGAT--GGCGTACCAAAGCTTCTGGGC-----CTTG 58905
Query 145828 CTGCTGGTAGCGGCCCT---CTTC---TTCGTATTTCCTGTAGAGCTCCTCAAACGCGGA 145881
|| | | ||| |||| |||| ||||| ||| ||| | |||| ||| |
Sbjct 58904 ATGGT-CTTGCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTC 58846
Query 145882 ACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTT 145941
|||||||| || | ||||||||| |||| |||||||||||| || | |||| || ||||
Sbjct 58845 GCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGACACATGAGGGTCCATTCGGCGTT 58786
Query 145942 GGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGC 146001
| ||| | || ||| |||| ||| || | ||| || ||| | | ||| || ||
Sbjct 58785 CTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGTCACGAGC 58726
Query 146002 TTTGCAATCCTCAGCACCCATGTT-TCGCTTCAAAT-TAAGCACACTATAGATGTCCGCG 146059
| ||||| || ||| | || ||| | | | || | | ||| || |||
Sbjct 58725 ACGGACCTCCTCCTTGCCGTGGTTCTTGC-GCAAGTCCATGAACTC-AAAGACATCGGCG 58668
Query 146060 TGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACG 146116
||||| || |||| |||| ||||| ||| || || |||||||||||||| |||
Sbjct 58667 TGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACG 58608
Query 146117 TGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTC 146176
| || | ||||||| ||||| || | |||||| ||| ||| | | ||||||
Sbjct 58607 TAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTAGAGGTGCCGTTG 58548
Query 146177 GTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC- 146235
|| | || || ||| || || | | || | || | || | || ||
Sbjct 58547 GTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTGAGACCAATGCCACCA 58488
Query 146236 GCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATG--CTA 146293
||| | |||||| || ||||||| ||| || |||||||| || |||||| |
Sbjct 58487 GCCAT-CTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCAATGGAGTC 58429
Query 146294 TCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAG 146353
| |||| ||| ||| || ||||| || ||| ||| | || || || || |
Sbjct 58428 TTCCTTC--ATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCGGCGTTG 58371
Query 146354 AACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATA 146413
|| | || ||| ||||| || || | || | | ||| | || || || ||
Sbjct 58370 AAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGTCTCAATG 58311
Query 146414 GCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGC 146473
|| | || ||||| || ||||| | ||||| ||||||| |||||| || ||
Sbjct 58310 ACGCGCTCAACATCGTCACCCCAGATGCCGACTGCGACACGCATGATCATGTGCTGCGGT 58251
Query 146474 CGCTCCGCCA-CTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCC 146532
| ||| || | |||| ||| | ||| | || || |||||||||||||| | ||
Sbjct 58250 CTCTCGGCAATCTTG-CCGTCGAGCTTCAGCAGGTATGATCTCTCCAGGGTTTTGAAACC 58192
Query 146533 GAAAAATTTGTA 146544
||| ||| |||
Sbjct 58191 GAAGTATTGGTA 58180
>seq791
Length=44334
Score = 125 bits (138), Expect = 7e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||||| || | || | ||| |||||||| || |||||||| |||
Sbjct 42440 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 42499
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| |||||||| || ||| |||| | ||||||||||| || |||
Sbjct 42500 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 42559
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | || |||| ||||| |
Sbjct 42560 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 42619
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236
|||| ||| | || || || || || || || ||||| ||||||||||
Sbjct 42620 TCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGA 42668
>seq1821
Length=135001
Score = 116 bits (128), Expect = 3e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| || |||||||| ||| | |||||| |||||| ||||||||||| ||| |||
Sbjct 45972 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGA 45913
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| || ||||||||||| || ||||| || || ||||| ||| || ||||| | |
Sbjct 45912 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 45853
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | || |||| |||||||| || | ||||| ||| ||||| || || || || ||||
Sbjct 45852 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 45793
Query 131225 AA 131226
||
Sbjct 45792 AA 45791
>seq1741
Length=26822
Score = 113 bits (124), Expect = 4e-20
Identities = 155/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||| | ||| || || || || | || |||||||| ||||||||||| |||
Sbjct 16969 CCACCGCGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAT 16910
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| || |||||||| || |||| |||||||||||||| || ||
Sbjct 16909 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGA 16850
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| || ||| ||||| | || | ||||| | |||||||
Sbjct 16849 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 16790
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
|| | ||| | ||| || || || || || || ||||
Sbjct 16789 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 16753
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || || | ||| || || | ||| | ||| || ||||| || |||||||| ||||||
Sbjct 17197 CCGCCACGAAGACGGAGTACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTC 17138
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| || || |||||||| || ||| |||| | |||||||||||| |||||
Sbjct 17137 AGGGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGA 17078
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || || || ||| || ||| | | || | || || | |||||||
Sbjct 17077 ATACCCTCCTTATCCTGGATCTTGGACTTCACGTTGTCAATCGTGTCTGATGACTCGACC 17018
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | |||| || || || || ||||| || ||||| ||||||||
Sbjct 17017 TCCAAAGTAATTGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 16971
>seq1058
Length=49244
Score = 104 bits (114), Expect = 2e-17
Identities = 335/509 (66%), Gaps = 21/509 (4%)
Strand=Plus/Minus
Query 46096 CGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAG 46155
|||||||| | |||||||| |||||||||||| | | | | | | |||||| ||
Sbjct 16577 CGCAAGAAGGCTGACTGGGCCTTGAAGTGGATCAGCGACGATAGCTCTTCCTTCGCCCAG 16518
Query 46156 CGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATC 46215
|| |||| ||||| || ||| ||||| |||| || || || ||| |||||
Sbjct 16517 CGGCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATC 16458
Query 46216 TTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATC 46274
|| | |||| || | || | |||||||||| ||||| || ||||||||| || ||
Sbjct 16457 TTCTGGCTCAAGAAGCGTGGTC-TCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTC 16399
Query 46275 GCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGA 46334
|| || ||||| || || || |||||||| || |||| | |||| |||
Sbjct 16398 CCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCTTGT-----ACTC----TCACCT 16348
Query 46335 CAAGCTTGCGCCCGA-CA--CCGTGC--TGAG--CATGTTCAAGGAGGCGGTGGCCATTG 46387
||||| ||||| | || | | | |||| ||| || || || || ||||
Sbjct 16347 CAAGC-ACCGCCCTAGCAAGCAGGTCATTGAGGACATTATCGTTGATGCCGTCAAGATTG 16289
Query 46388 AGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAA 46447
|| ||||||| | || | || ||||| || || || ||||||||| | | | |
Sbjct 16288 AGCAGGAGTTCCTAACCGAGGCTCTGCCTTGCGCTCTCCTCGGCATGAACTCCAACTTGA 16229
Query 46448 TGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGC 46507
|| | ||||||||||| || || ||||| || | || ||| | | |||
Sbjct 16228 TGAAGCAGTACATCGAGTTCGTTGCCGACCGTCTCTTGGTTGCTCTTGGCAACGACAAG- 16170
Query 46508 ATTTTCACG-CGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACT 46566
| | || | | ||| || ||||| || ||| | ||||||||||| | ||||| ||
Sbjct 16169 GTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACC 16110
Query 46567 AATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595
|| || || || |||||||| | ||| ||
Sbjct 16109 AACTTCTTTGAGAAGCGCGTTGCCGACTA 16081
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471996421155840
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