Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1932 154 2e-32 >seq1932 Length=74184 Score = 154 bits (170), Expect = 2e-32 Identities = 627/979 (64%), Gaps = 22/979 (2%) Strand=Plus/Minus Query 62747 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 62805 |||| ||| |||| || || || || ||||||| || | ||| || | || ||||| Sbjct 59102 GCAAGAGAGGCCAAGTTGCATACAGCAACCTCATCAGGGGC-GCAGTACTCAATGATCTC 59044 Query 62806 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 62865 |||||| ||||| | ||||||||| | || | || || ||||| ||| Sbjct 59043 AGTGCAGAGATTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGC 58984 Query 62866 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 62925 || ||||| ||||| ||||| || | || || ||| |||||| || | || || | Sbjct 58983 GGCGTCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTA 58924 Query 62926 CCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTT---TTCTCTTTCGTATAGTG 62981 ||| | | || | ||||| || | ||| | ||| ||| | ||||| Sbjct 58923 CCAAA-GCTTCTGGGCCTTGATGGTC---TTGCGACCCTTGCCTTCGCGCTCGTACTTCT 58868 Query 62982 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGAC 63041 ||||| |||||||| || || | | |||| || || || || | |||| Sbjct 58867 CGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGAC 58808 Query 63042 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63101 |||| | | ||| || ||| | || |||| ||||| || ||||| || ||||| | Sbjct 58807 ACATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGA 58748 Query 63102 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63161 | || | || || || | | | ||||| || || ||||| | || | Sbjct 58747 GGGCGAGGAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCA 58688 Query 63162 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63221 |||| | | | ||| | ||||| || || | ||| ||||| | | ||||| || | Sbjct 58687 TGAACTCAAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCT 58628 Query 63222 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63281 |||| || ||||| || | ||| | ||| ||||| || | || | | ||| ||||| | Sbjct 58627 TGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGA 58568 Query 63282 TACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATAT--TACT 63339 ||| || || || || ||||| || | |||||| ||| ||||||| ||| | Sbjct 58567 CACCGTTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGG 58508 Query 63340 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 63399 |||| |||| || || || ||||| || ||||| | ||||| || | || || Sbjct 58507 CGTTGA--GACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTC 58450 Query 63400 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63459 ||||| ||||| || || ||| |||||| | || || || ||||| ||| Sbjct 58449 GTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCA 58390 Query 63460 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAG 63519 || || || || || || | || || || ||||| || || | || || | Sbjct 58389 CTGAGGGGTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACAT 58330 Query 63520 TAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGA 63575 || ||||| |||||||| | || | ||| || |||| || ||||||| Sbjct 58329 GAGGTTGTAGGTCTCAATGACGCGCTCAACATCGTCACCCCAGATG----CCGACTGCGA 58274 Query 63576 CACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGG 63635 ||||||| | ||||||||| ||||| || | |||||| || | |||| || ||| | Sbjct 58273 CACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTCAGCAGGTATG 58214 Query 63636 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAA 63695 || | |||| ||||| ||||| || || | ||| ||||| || ||||| | ||| Sbjct 58213 ATCTCTCCAGGGTTTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGG 58154 Query 63696 CCGAGTTGAGTTTATCCTT 63714 | |||| ||| | ||||| Sbjct 58153 CAGAGTCGAGCTCCTCCTT 58135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633610012969600