Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 154 2e-32
>seq1932
Length=74184
Score = 154 bits (170), Expect = 2e-32
Identities = 627/979 (64%), Gaps = 22/979 (2%)
Strand=Plus/Minus
Query 62747 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 62805
|||| ||| |||| || || || || ||||||| || | ||| || | || |||||
Sbjct 59102 GCAAGAGAGGCCAAGTTGCATACAGCAACCTCATCAGGGGC-GCAGTACTCAATGATCTC 59044
Query 62806 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 62865
|||||| ||||| | ||||||||| | || | || || ||||| |||
Sbjct 59043 AGTGCAGAGATTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGC 58984
Query 62866 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 62925
|| ||||| ||||| ||||| || | || || ||| |||||| || | || || |
Sbjct 58983 GGCGTCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTA 58924
Query 62926 CCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTT---TTCTCTTTCGTATAGTG 62981
||| | | || | ||||| || | ||| | ||| ||| | |||||
Sbjct 58923 CCAAA-GCTTCTGGGCCTTGATGGTC---TTGCGACCCTTGCCTTCGCGCTCGTACTTCT 58868
Query 62982 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGAC 63041
||||| |||||||| || || | | |||| || || || || | ||||
Sbjct 58867 CGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGAC 58808
Query 63042 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63101
|||| | | ||| || ||| | || |||| ||||| || ||||| || ||||| |
Sbjct 58807 ACATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGA 58748
Query 63102 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63161
| || | || || || | | | ||||| || || ||||| | || |
Sbjct 58747 GGGCGAGGAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCA 58688
Query 63162 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63221
|||| | | | ||| | ||||| || || | ||| ||||| | | ||||| || |
Sbjct 58687 TGAACTCAAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCT 58628
Query 63222 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63281
|||| || ||||| || | ||| | ||| ||||| || | || | | ||| ||||| |
Sbjct 58627 TGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGA 58568
Query 63282 TACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATAT--TACT 63339
||| || || || || ||||| || | |||||| ||| ||||||| ||| |
Sbjct 58567 CACCGTTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGG 58508
Query 63340 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 63399
|||| |||| || || || ||||| || ||||| | ||||| || | || ||
Sbjct 58507 CGTTGA--GACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTC 58450
Query 63400 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63459
||||| ||||| || || ||| |||||| | || || || ||||| |||
Sbjct 58449 GTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCA 58390
Query 63460 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAG 63519
|| || || || || || | || || || ||||| || || | || || |
Sbjct 58389 CTGAGGGGTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACAT 58330
Query 63520 TAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGA 63575
|| ||||| |||||||| | || | ||| || |||| || |||||||
Sbjct 58329 GAGGTTGTAGGTCTCAATGACGCGCTCAACATCGTCACCCCAGATG----CCGACTGCGA 58274
Query 63576 CACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGG 63635
||||||| | ||||||||| ||||| || | |||||| || | |||| || ||| |
Sbjct 58273 CACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTCAGCAGGTATG 58214
Query 63636 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAA 63695
|| | |||| ||||| ||||| || || | ||| ||||| || ||||| | |||
Sbjct 58213 ATCTCTCCAGGGTTTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGG 58154
Query 63696 CCGAGTTGAGTTTATCCTT 63714
| |||| ||| | |||||
Sbjct 58153 CAGAGTCGAGCTCCTCCTT 58135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633610012969600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |