Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1058 111 2e-19 >seq1058 Length=49244 Score = 111 bits (122), Expect = 2e-19 Identities = 224/332 (67%), Gaps = 3/332 (1%) Strand=Plus/Plus Query 93317 GTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATT 93376 || || |||||||| || ||||| |||| ||| || ||||| || ||||| Sbjct 16644 GTATCAATAGCGTTGAAGAGGTACGTGCGCTGCGCCGGCTCCTTGATGTAAGTGTCGATG 16703 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 | || || || | ||||| || | |||||||| || ||||| |||||||| || Sbjct 16704 AGGAGGGAGTAGGTCTCAGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAG 16763 Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATA 93496 | ||| || | || ||| ||||| || || | ||| ||||| || || ||||| || Sbjct 16764 CGAGCCTCAGGGACCTGGACTTCGCCGGAGAAGCGCTCAACGAGGTTCTCGTTGACGATG 16823 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTA 93556 || |||||||| || || || || | || || || || | ||||||||||| || Sbjct 16824 CCGTCGGATGCGGCGAAGAAGGCAAGGATGTGAGAGATGAAGTACTTCTCATCATCGTTG 16883 Query 93557 AGC---TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAAC 93613 | | || | ||| ||| ||||| || || ||||| | || || | ||||| || Sbjct 16884 ATCTTGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCGGTCCAGAAA 16943 Query 93614 GATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 || || || || || || ||||| | ||| || Sbjct 16944 GAGGCCTCAGCCTTCTTATACATTTGCCAGAT 16975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556841476930240