Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq1058 111 2e-19
>seq1058
Length=49244
Score = 111 bits (122), Expect = 2e-19
Identities = 224/332 (67%), Gaps = 3/332 (1%)
Strand=Plus/Plus
Query 93317 GTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATT 93376
|| || |||||||| || ||||| |||| ||| || ||||| || |||||
Sbjct 16644 GTATCAATAGCGTTGAAGAGGTACGTGCGCTGCGCCGGCTCCTTGATGTAAGTGTCGATG 16703
Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436
| || || || | ||||| || | |||||||| || ||||| |||||||| ||
Sbjct 16704 AGGAGGGAGTAGGTCTCAGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAG 16763
Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATA 93496
| ||| || | || ||| ||||| || || | ||| ||||| || || ||||| ||
Sbjct 16764 CGAGCCTCAGGGACCTGGACTTCGCCGGAGAAGCGCTCAACGAGGTTCTCGTTGACGATG 16823
Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTA 93556
|| |||||||| || || || || | || || || || | ||||||||||| ||
Sbjct 16824 CCGTCGGATGCGGCGAAGAAGGCAAGGATGTGAGAGATGAAGTACTTCTCATCATCGTTG 16883
Query 93557 AGC---TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAAC 93613
| | || | ||| ||| ||||| || || ||||| | || || | ||||| ||
Sbjct 16884 ATCTTGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCCTCAGCGGTCCAGAAA 16943
Query 93614 GATGCTTCTGCTTTTTTGTACATATCCCATAT 93645
|| || || || || || ||||| | ||| ||
Sbjct 16944 GAGGCCTCAGCCTTCTTATACATTTGCCAGAT 16975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556841476930240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |