Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1387 100 6e-16 seq1210 89.7 1e-12 >seq1387 Length=29743 Score = 100 bits (110), Expect = 6e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| ||||| || || || |||| |||||||| || ||| Sbjct 2191 GGTGAGGACCTTTGCAACTGCACCTTCTCCCTTGCCTACGGTGCCAAGATTCTTCTTAAC 2250 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| |||| ||||||||||| | || || ||||| ||||||||| || | Sbjct 2251 CAGACCCACCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 2310 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 2311 GGAAAGTCTACTCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 2369 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || ||||| | ||| || | || ||||||||| | ||||| Sbjct 2370 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTGGACTC 2411 Score = 96.9 bits (106), Expect = 7e-15 Identities = 96/122 (79%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||||||||| || ||||| || || || ||| ||||| | ||| | | || Sbjct 3593 CTCACTCTCGCATGCGTGGTCTGTCCGGTGGTCAGCGTGTCAAGGTCGTCCTTGCTGCCT 3652 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||||| ||| ||| ||||||| |||||||||||||||||||| || ||||| Sbjct 3653 GCTCT-TGGCAACGCCCCCACTTGATCGTCCTCGACGAGCCTACCAACTACCTCGACCGT 3711 Query 280821 GA 280822 || Sbjct 3712 GA 3713 >seq1210 Length=67313 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || ||||| ||||| |||||||||||| ||||||| |||| ||||| || | Sbjct 10714 GTCGGCTCCCTGTCCGGTGGATGGAAGATGAAGTTGGCCCTGGCTCGTGCCATGCTGAAG 10773 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 | ||||||||||| || | || || || || |||||| |||| ||||| | ||| Sbjct 10774 GGCGCCGATGTCCTGTTGTTGGACGAACCTACTAACCACTTGGATGTTGCCAACATTGCC 10833 Query 279816 TGGCTAGTGTCCTACCT 279832 ||||| | | |||||| Sbjct 10834 TGGCTCGAGAACTACCT 10850 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 10/192 (5%) Strand=Plus/Plus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG---- 280229 ||||||| ||||||||||| || ||||| || || ||||| |||| ||||| ||| Sbjct 11195 TCATTGGCCCCAATGGTGCCGGCAAGTCCACTCTCATCAAGATCCTCACTGGTGAGGTCA 11254 Query 280230 -ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 |||| || | || |||| |||||| |||||| |||| || | ||| || Sbjct 11255 TTCCCA-GCACCGGAAAGGTC----GAGAAGCACCCCAACTTGCGTATCGGCTACATCAA 11309 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348 |||||||| || | ||| |||||| || || || | ||| || ||||| ||| | || Sbjct 11310 GCAGCACGCCCTCGAGCACGTCGAGATGCATCTTGAGAAGACCCCCAACCAGTACCTGCA 11369 Query 280349 GTGGCGCTATGC 280360 |||||| || || Sbjct 11370 GTGGCGTTACGC 11381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027800242414616