Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq791 176 8e-39
seq1741 158 2e-33
seq1387 111 3e-19
seq2136 105 1e-17
seq1210 89.7 9e-13
>seq791
Length=44334
Score = 176 bits (194), Expect = 8e-39
Identities = 177/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| |||| ||| || |||||||| || |||||||| || ||||||
Sbjct 42440 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 42499
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || || | || |||||||| ||
Sbjct 42500 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 42559
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| | |||||| ||||||||||| | || || ||
Sbjct 42560 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 42619
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464
|| | |||||| || || ||||| |||||||||||||| |||||||| ||
Sbjct 42620 TCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGAT 42669
>seq1741
Length=26822
Score = 158 bits (174), Expect = 2e-33
Identities = 165/217 (76%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| |||||||| || | |||||||| ||||||||||| || || ||||| || |||||
Sbjct 16969 CCACCGCGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAT 16910
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | ||||| || || || || | | || ||||| || |||
Sbjct 16909 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGA 16850
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | |||||| |||||||| || | || || ||
Sbjct 16849 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 16790
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451
|| | ||||||||| || || ||||||||||||||||
Sbjct 16789 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 16753
>seq1387
Length=29743
Score = 111 bits (122), Expect = 3e-19
Identities = 662/1040 (64%), Gaps = 48/1040 (5%)
Strand=Plus/Minus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| | |||||| |||||| |||||| || || ||| ||||||
Sbjct 3200 CGCCACTGGATGTACTCGGAGGGGGTGCTGTCCAAGTGGTTATCGATGTGGGCGAAAGCG 3141
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099
||||| | ||| || || || ||||| |||| | | | | | || ||
Sbjct 3140 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAAATCTCACCAACGGTAGGG 3081
Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159
| | || || || ||||| |||||||| || | ||| || ||||| ||||| |||||
Sbjct 3080 ATAAGT-TCACCAGTAAGGACGTTGATGAGGGTGGACTTTCCGGCACCGTTGGGACCAAT 3022
Query 225160 CACGCCAATCCGGGATGACATTGCAAC-CTGCGAGTTCACGTTGCTGAAGATCTCAGG-- 225216
|| |||| ||||| | | | | | ||| || | || | |||||| ||
Sbjct 3021 GACAGCAATACGGGA-GCCGAGGGAGCACTGGAAGGAGATGTCGG---AGATCTGGGGCT 2966
Query 225217 -GCCAGTTT---GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGGT 225266
|| || |||| |||| || | |||| || ||||| |
Sbjct 2965 TGCTGGTACCGGGGTACTGGAAGGACATCTTGCTGGCACGTAGA------ATGGCCTTGG 2912
Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGT 225326
|||||| | | |||||| ||||| |||||||||||||| ||| || | | ||
Sbjct 2911 CCTTGGTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGAGAACTCCATCTCGGAGT 2852
Query 225327 CCTTCAGGTCGTAGTAAGAT---GCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGT 225383
| || |||||||| || ||||| || || ||| ||||| | ||||
Sbjct 2851 CGGAGAGCTCGTAGTAGGACTTGGCAGCAG-GGTTCTTCTTG--ACGAACTCCTTGAGGT 2795
Query 225384 TTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACT 225442
| || ||| | | ||||||| | || |||||||||| || ||| | ||| ||
Sbjct 2794 TACCACGGTAGCGCTTAAGCTTGAAGCGCT---CGTAATGAACGATGTGCTG-GCAAACG 2739
Query 225443 GCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTT 225501
||| ||||| |||||||||||||| || |||||||| | || | | || | |
Sbjct 2738 TTGTCGAGGAAACCAGAGTCGTGGGAAACGATGATGGAAGTGCAGG---GGGAGTTCAT- 2683
Query 225502 GAGGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCA 225560
||||| || | |||||| ||||| | ||||||| ||||| ||||| || || |
Sbjct 2682 GAGGTA-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAAATGGTTGGTAGGCTCATCGA 2624
Query 225561 GAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGC 225620
||||||| || || | | | || || || || || | || |||||| ||||| |
Sbjct 2623 GAAGCAGAATATCGGGAGCCTCGAAGACAGCACGGCACAGGGCCAACTTCATCTTCCAAC 2564
Query 225621 CCCCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGA 225680
| || ||||||| ||| | | | | || ||| |||||| |||| ||
Sbjct 2563 CACCAGACAGGGCAGAGATCTCACCCTTAACCATGGCCTCGGTGAAGCCGAACTCGTTGA 2504
Query 225681 GCGT---CTGGATAATGCGCTCGGGAGA-GCTGCGAGCGGCAACGTTGGGGTCGGACGAG 225736
|| | || || | | || ||||| | || | ||||| || | | | |
Sbjct 2503 GCTTGGCCTCGACA-TCAGCCTGGGAGGTGGTGACACCGGCATCGGCAAGCTTCTTCATG 2445
Query 225737 AGGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACC 225796
| || |||||| || | | ||| | ||| | |||||| || ||| | ||
Sbjct 2444 GTCCACTCGATCGTGGTCATCTCAGTGTCAGCAGAGTCCAGGTCGTGCTCGACGAAGACG 2385
Query 225797 GTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGC 225856
||| || || || | |||||| ||||| | ||| | || || ||||| |
Sbjct 2384 GTCTTGACCTCGGACTGCTTGGGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATG 2325
Query 225857 AGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATG 225916
|| ||| ||| || | |||||||||||| || ||||| | | || |||||||
Sbjct 2324 AGAGTAGACTTTCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGA 2265
Query 225917 TTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCG 225976
|||| | || ||| || || |||||| |||| |||||||||||||| ||| | |
Sbjct 2264 CGGAGGTGGGTCTGGTTAAGAAGAATCTTGGCACCGTAGGCAAGGGAGAAGGTGCAGTTG 2205
Query 225977 CACAGGTCCTCACCCTCCTC 225996
|| |||||||||||||||||
Sbjct 2204 CAAAGGTCCTCACCCTCCTC 2185
>seq2136
Length=34260
Score = 105 bits (116), Expect = 1e-17
Identities = 213/315 (68%), Gaps = 6/315 (2%)
Strand=Plus/Minus
Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356
|| |||||||| ||||| ||| || || || ||||| ||||| | ||||| | |
Sbjct 31117 CCGGTGTGGACATCCTCAGAGAAACCGATTTCGGCAGTTCCGCCAACCTCGACAAGGGAC 31058
Query 59357 TCTCGGCGGTAGACTGCGCATGTCCCGACGCACACGGCGCCGCCAAAGGTGTCGCGAGAA 59416
|| || ||||||| ||| | |||||||| | | | | || | ||| ||
Sbjct 31057 TCACGACGGTAGAGTGCATTGCTACCGACGCAGATCGAGGCTCCCCATCTGTTACGGTTG 30998
Query 59417 ACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAGTC 59476
|| || | | ||||||||| || ||||| || || || | ||||||||||||||
Sbjct 30997 ACTTGTACAACACGGTAGAATAGCTCCTGTGTGGCACCGGCTCCCTGCTCAACCCAAGTC 30938
Query 59477 TGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCATGG 59536
|||||| | || |||| |||| ||| | || |||| || |||| |||| |
Sbjct 30937 TGGTCGTCGGTGACACGGAAGTACTGAGGGCTTTGAACAAGGGCCGTCTTATCGTC---G 30881
Query 59537 GAAAAGTAGGG---CATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCATCG 59593
|||| ||| | |||||| | ||||||||||||| |||||||| ||||||
Sbjct 30880 CCCAAGTGCTCAACCATCAATTCCTTAACAAAGTCAGGGCGCGGGCAGAAGTCGGCATCG 30821
Query 59594 AAGATGGCAAAGAAG 59608
||||| || ||||||
Sbjct 30820 AAGATTGCGAAGAAG 30806
>seq1210
Length=67313
Score = 89.7 bits (98), Expect = 9e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504
||| ||||| || |||||||| || ||||| | | | || | || ||||||
Sbjct 10908 GTCGAGGAAACCGGAGTCGTGAGAAACAATCAAACTGGTGATGTCGGGGTGGGTCTTGAG 10849
Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564
|| | |||||| || | |||| || |||| |||||| ||||||||||||| |
Sbjct 10848 GTAGTTCTCGAGCCAGGCAATGTTGGCAACATCCAAGTGGTTAGTAGGTTCGTCCAACAA 10789
Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624
||||| || || | | || ||||| || | || | || |||||| ||||| || ||
Sbjct 10788 CAGGACATCGGCGCCCTTCAGCATGGCACGAGCCAGGGCCAACTTCATCTTCCATCCACC 10729
Query 225625 GGACAGGGAGCCGA 225638
||||||||||||||
Sbjct 10728 GGACAGGGAGCCGA 10715
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921590419702720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |