Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq791 176 8e-39 seq1741 158 2e-33 seq1387 111 3e-19 seq2136 105 1e-17 seq1210 89.7 9e-13 >seq791 Length=44334 Score = 176 bits (194), Expect = 8e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || |||||||| || |||||||| || |||||| Sbjct 42440 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 42499 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || |||||||| || Sbjct 42500 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 42559 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 42560 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 42619 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || ||||| |||||||||||||| |||||||| || Sbjct 42620 TCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGAT 42669 >seq1741 Length=26822 Score = 158 bits (174), Expect = 2e-33 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | |||||||| ||||||||||| || || ||||| || ||||| Sbjct 16969 CCACCGCGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAT 16910 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| || || || || | | || ||||| || ||| Sbjct 16909 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGA 16850 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | |||||| |||||||| || | || || || Sbjct 16849 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 16790 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | ||||||||| || || |||||||||||||||| Sbjct 16789 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 16753 >seq1387 Length=29743 Score = 111 bits (122), Expect = 3e-19 Identities = 662/1040 (64%), Gaps = 48/1040 (5%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | |||||| |||||| |||||| || || ||| |||||| Sbjct 3200 CGCCACTGGATGTACTCGGAGGGGGTGCTGTCCAAGTGGTTATCGATGTGGGCGAAAGCG 3141 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099 ||||| | ||| || || || ||||| |||| | | | | | || || Sbjct 3140 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAAATCTCACCAACGGTAGGG 3081 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 | | || || || ||||| |||||||| || | ||| || ||||| ||||| ||||| Sbjct 3080 ATAAGT-TCACCAGTAAGGACGTTGATGAGGGTGGACTTTCCGGCACCGTTGGGACCAAT 3022 Query 225160 CACGCCAATCCGGGATGACATTGCAAC-CTGCGAGTTCACGTTGCTGAAGATCTCAGG-- 225216 || |||| ||||| | | | | | ||| || | || | |||||| || Sbjct 3021 GACAGCAATACGGGA-GCCGAGGGAGCACTGGAAGGAGATGTCGG---AGATCTGGGGCT 2966 Query 225217 -GCCAGTTT---GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGGT 225266 || || |||| |||| || | |||| || ||||| | Sbjct 2965 TGCTGGTACCGGGGTACTGGAAGGACATCTTGCTGGCACGTAGA------ATGGCCTTGG 2912 Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGT 225326 |||||| | | |||||| ||||| |||||||||||||| ||| || | | || Sbjct 2911 CCTTGGTCTTGACACCCTCGAGGAAACCGGGCTCGGGGAAGGAGAACTCCATCTCGGAGT 2852 Query 225327 CCTTCAGGTCGTAGTAAGAT---GCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGT 225383 | || |||||||| || ||||| || || ||| ||||| | |||| Sbjct 2851 CGGAGAGCTCGTAGTAGGACTTGGCAGCAG-GGTTCTTCTTG--ACGAACTCCTTGAGGT 2795 Query 225384 TTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACT 225442 | || ||| | | ||||||| | || |||||||||| || ||| | ||| || Sbjct 2794 TACCACGGTAGCGCTTAAGCTTGAAGCGCT---CGTAATGAACGATGTGCTG-GCAAACG 2739 Query 225443 GCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTT 225501 ||| ||||| |||||||||||||| || |||||||| | || | | || | | Sbjct 2738 TTGTCGAGGAAACCAGAGTCGTGGGAAACGATGATGGAAGTGCAGG---GGGAGTTCAT- 2683 Query 225502 GAGGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCA 225560 ||||| || | |||||| ||||| | ||||||| ||||| ||||| || || | Sbjct 2682 GAGGTA-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAAATGGTTGGTAGGCTCATCGA 2624 Query 225561 GAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGC 225620 ||||||| || || | | | || || || || || | || |||||| ||||| | Sbjct 2623 GAAGCAGAATATCGGGAGCCTCGAAGACAGCACGGCACAGGGCCAACTTCATCTTCCAAC 2564 Query 225621 CCCCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGA 225680 | || ||||||| ||| | | | | || ||| |||||| |||| || Sbjct 2563 CACCAGACAGGGCAGAGATCTCACCCTTAACCATGGCCTCGGTGAAGCCGAACTCGTTGA 2504 Query 225681 GCGT---CTGGATAATGCGCTCGGGAGA-GCTGCGAGCGGCAACGTTGGGGTCGGACGAG 225736 || | || || | | || ||||| | || | ||||| || | | | | Sbjct 2503 GCTTGGCCTCGACA-TCAGCCTGGGAGGTGGTGACACCGGCATCGGCAAGCTTCTTCATG 2445 Query 225737 AGGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACC 225796 | || |||||| || | | ||| | ||| | |||||| || ||| | || Sbjct 2444 GTCCACTCGATCGTGGTCATCTCAGTGTCAGCAGAGTCCAGGTCGTGCTCGACGAAGACG 2385 Query 225797 GTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGC 225856 ||| || || || | |||||| ||||| | ||| | || || ||||| | Sbjct 2384 GTCTTGACCTCGGACTGCTTGGGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATG 2325 Query 225857 AGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATG 225916 || ||| ||| || | |||||||||||| || ||||| | | || ||||||| Sbjct 2324 AGAGTAGACTTTCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGA 2265 Query 225917 TTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCG 225976 |||| | || ||| || || |||||| |||| |||||||||||||| ||| | | Sbjct 2264 CGGAGGTGGGTCTGGTTAAGAAGAATCTTGGCACCGTAGGCAAGGGAGAAGGTGCAGTTG 2205 Query 225977 CACAGGTCCTCACCCTCCTC 225996 || ||||||||||||||||| Sbjct 2204 CAAAGGTCCTCACCCTCCTC 2185 >seq2136 Length=34260 Score = 105 bits (116), Expect = 1e-17 Identities = 213/315 (68%), Gaps = 6/315 (2%) Strand=Plus/Minus Query 59297 CCCGTGTGGACGTCCTCGCTGAAGCCAATCTCAGCAGTGCCGCCGAAAGGTACAAGCGCC 59356 || |||||||| ||||| ||| || || || ||||| ||||| | ||||| | | Sbjct 31117 CCGGTGTGGACATCCTCAGAGAAACCGATTTCGGCAGTTCCGCCAACCTCGACAAGGGAC 31058 Query 59357 TCTCGGCGGTAGACTGCGCATGTCCCGACGCACACGGCGCCGCCAAAGGTGTCGCGAGAA 59416 || || ||||||| ||| | |||||||| | | | | || | ||| || Sbjct 31057 TCACGACGGTAGAGTGCATTGCTACCGACGCAGATCGAGGCTCCCCATCTGTTACGGTTG 30998 Query 59417 ACCTGGATGAAACGGTAGAACAGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAGTC 59476 || || | | ||||||||| || ||||| || || || | |||||||||||||| Sbjct 30997 ACTTGTACAACACGGTAGAATAGCTCCTGTGTGGCACCGGCTCCCTGCTCAACCCAAGTC 30938 Query 59477 TGGTCGGGGCGAACCTCGAAGAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCATGG 59536 |||||| | || |||| |||| ||| | || |||| || |||| |||| | Sbjct 30937 TGGTCGTCGGTGACACGGAAGTACTGAGGGCTTTGAACAAGGGCCGTCTTATCGTC---G 30881 Query 59537 GAAAAGTAGGG---CATGATTTCCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCATCG 59593 |||| ||| | |||||| | ||||||||||||| |||||||| |||||| Sbjct 30880 CCCAAGTGCTCAACCATCAATTCCTTAACAAAGTCAGGGCGCGGGCAGAAGTCGGCATCG 30821 Query 59594 AAGATGGCAAAGAAG 59608 ||||| || |||||| Sbjct 30820 AAGATTGCGAAGAAG 30806 >seq1210 Length=67313 Score = 89.7 bits (98), Expect = 9e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504 ||| ||||| || |||||||| || ||||| | | | || | || |||||| Sbjct 10908 GTCGAGGAAACCGGAGTCGTGAGAAACAATCAAACTGGTGATGTCGGGGTGGGTCTTGAG 10849 Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564 || | |||||| || | |||| || |||| |||||| ||||||||||||| | Sbjct 10848 GTAGTTCTCGAGCCAGGCAATGTTGGCAACATCCAAGTGGTTAGTAGGTTCGTCCAACAA 10789 Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 ||||| || || | | || ||||| || | || | || |||||| ||||| || || Sbjct 10788 CAGGACATCGGCGCCCTTCAGCATGGCACGAGCCAGGGCCAACTTCATCTTCCATCCACC 10729 Query 225625 GGACAGGGAGCCGA 225638 |||||||||||||| Sbjct 10728 GGACAGGGAGCCGA 10715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921590419702720