Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 435 6e-117
seq1058 269 5e-67
>seq1932
Length=74184
Score = 435 bits (482), Expect = 6e-117
Identities = 1060/1585 (67%), Gaps = 63/1585 (4%)
Strand=Plus/Minus
Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGA- 243932
|| ||||||||||||| |||||||| ||||| | || || || ||||| || |
Sbjct 59886 GATGTTGAGGGACTGGGACTGGTCGATGAAGGCACCACGATCGGCAGCCATCTGGACAAC 59827
Query 243933 GGTCCT-TCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGG--GGA 243989
||| | | ||||| || || ||| |||||||| | | ||||| ||||| |||
Sbjct 59826 GGTGCGCTGGGAGATTTCCCAGACG--GTCTTGTACAGAGCCTTGAC---CTCGGCGGGA 59772
Query 243990 ACCCTTCG-ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCG 244048
| | | |||||||| || || || || | | | |||| || | |||| ||||
Sbjct 59771 ATGTTGGGGATGTTCTGAACGGAACCATTCTCGGCAATGATACGGTTCTTCATGGCATCG 59712
Query 244049 TTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCT 244108
||| | ||||| | | || ||| | ||| ||| || ||||| |||||
Sbjct 59711 GACCATAAGCCCATGTCGACGAGATCCTTAAGCAGCCAGGGGTTGACAACCTGGAACTCG 59652
Query 244109 CCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTG 244168
|| | || || ||||||||||||| |||| || ||||||| || ||| |||||
Sbjct 59651 CCGGCAAGAACACGGCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTG 59592
Query 244169 CCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACG 244228
|||| ||||| | ||| ||||| |||||||| | || ||||||||||| | ||
Sbjct 59591 CCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAACAAGCAGACTGTTGCGAACA 59532
Query 244229 CCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCC---AGTCCCACATGCCCGAGAGGTCC 244285
||||| || ||| ||| ||| ||| ||||||| | || |||||||
Sbjct 59531 CCGTGTTCCTTGAT-------CTG--CTCCTTCAGAGAGTCCCA---GTCCCAGAGGTCA 59484
Query 244286 TCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCG 244345
| | |||| ||||||||| |||| || | |||| | || ||| |||||||
Sbjct 59483 GAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGGAGCCCTCG 59424
Query 244346 TAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTC-TCGTCGAGGGCGGCGTA 244404
|| || | ||||| ||| || | |||||| | | | | | ||| || || ||||
Sbjct 59423 TACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAACGGACATGGTC-AGAGCAGCGTG 59365
Query 244405 GTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT--GAAGGGG 244462
||||||||||||||| ||| ||||||| | ||||| |||| | | || ||| ||
Sbjct 59364 GTAGATGGTCTCGAAAATCTTCTTGTTGAGATCGCGAGCCT--CAGGAGACTCGAAAGGC 59307
Query 244463 ATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGT 244522
|||| | | |||| | || || || ||||| || || | ||||||||| | |||
Sbjct 59306 ATGCGTAGGGCAAGGAAGGCATCAGCAAGACCCTGGACACCAAGGCCGATGGGACGGTGA 59247
Query 244523 CGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTG 244582
||| ||||| | || || || |||||||| |||| | || || | ||||||
Sbjct 59246 CGCATGTTGCTGTTGCGAGCCTCAGGAACGGGGTAGTGGTTGACATCAATGATCTTGTTC 59187
Query 244583 AGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGA 244642
||||||||| | | | ||| ||| ||| ||| || ||||| | |
Sbjct 59186 AGGTTGCGGACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAATCGTAGAC------A 59133
Query 244643 TCCTCGGCGATGGTGATCCTCACAAACTCGTTG--AGGGCGACGCTGGCCAGGTTGCAGA 244700
||||| | | || | || || || | ||||| | ||||| |||||| |
Sbjct 59132 CCCTCGTTG-TAGTCA-----ACGAAG--GTAGGCAGGGCAAGAGAGGCCAAGTTGCATA 59081
Query 244701 CGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGA 244760
| || ||||| || | | | ||||| | ||||| |||||||| || || ||
Sbjct 59080 CAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGATTGGAGCTGCGGA 59021
Query 244761 TGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGG 244820
|||| || |||| || || ||| |||| ||| |||||||||||| ||||||||||
Sbjct 59020 TGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGTCCTTGTAAAGCATGAAGG 58961
Query 244821 GCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCG 244880
| |||||||| ||| || |||||| | || ||| || | | ||||||| |
Sbjct 58960 GGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCTTCTGGGCCTTGATGG 58901
Query 244881 TCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCC 244940
|| ||||| ||||||| || |||||| ||||| |||||||||||| |||
Sbjct 58900 TCTTGCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGT 58841
Query 244941 AGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCC 244999
|| || | |||||||||||| || ||| |||||||| |||| ||| || | |
Sbjct 58840 AGCAGTCAGCCAGGCCGGGGCACT-CGTTGGGACACATGAGGGTCCATTCGGCGTTCTTC 58782
Query 245000 TTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTC 245059
| ||| |||| |||||| || ||||||||||||||||| |||| ||||| | | |
Sbjct 58781 TCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGTCACGAGCACGG 58722
Query 245060 TGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAG 245119
||| ||| ||| |||||| | || |||| || |||||||| ||| |||||||
Sbjct 58721 ACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCAAAGACATCGGCGTGCCAA 58662
Query 245120 GGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTC 245179
||||| | ||||| |||| ||| || || ||||||||||| |||||||| | | |
Sbjct 58661 GGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGA----CGTA 58606
Query 245180 TCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGT 245235
||||| |||||||| || || | || | | ||||||||| |||||||||
Sbjct 58605 GCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTAGAGGTGCCGTTGGT 58546
Query 245236 GCCCTTGATGTAGGCGCCCTTGCCCCTGA---GGTTGCTGATGGACATGCCTAGTCCGCC 245292
||| || |||| ||| || | | || ||| | | || | || | || ||
Sbjct 58545 GCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTG---AGACCAATGCCACC 58489
Query 245293 GGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTC 245352
|| ||||||||| | ||||||| |||||| |||||| || ||||| ||| |||
Sbjct 58488 AGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCAATGGAGTC 58429
Query 245353 CGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAA 245412
|||||||| || || ||||| || ||||||||| || ||| | | | ||||||
Sbjct 58428 TTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCGGCGTTGAA 58369
Query 245413 CAGAGTGGGGCTGGCGTGGGTAAAG 245437
|| |||||| ||||||||| |||
Sbjct 58368 GAGTGTGGGGGAGGCGTGGGTGAAG 58344
>seq1058
Length=49244
Score = 269 bits (298), Expect = 5e-67
Identities = 373/512 (73%), Gaps = 25/512 (5%)
Strand=Plus/Minus
Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAG 42703
|||||||| |||||||| | || |||||| || | | | | | | |||| | || |
Sbjct 16574 AAGAAGGCTGACTGGGCCTTGAAGTGGATC-AGCGACGATAGCTCTTCCTTCGCCCAGCG 16516
Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763
|||||| ||||| |||| |||||||| ||||||||| || |||||||||||||||||
Sbjct 16515 GCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTT 16456
Query 42764 CTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822
|||||||||| || ||| || |||||||| || |||||||| ||||| |||||| |
Sbjct 16455 CTGGCTCAAGAAGCGTGGTCTC-ATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCC 16397
Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882
| || ||||| || || | ||||||||||||||| ||| ||| ||||||| ||||
Sbjct 16396 GTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCTTGTACTC---TCACCTCAAGCAC- 16341
Query 42883 AGCCCTCGAAGGAGCGGGTC---CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGG 42939
||||| | | ||| |||| || ||| ||| || ||||| |||| ||| |||
Sbjct 16340 CGCCCTAGCA--AGCAGGTCATTGAGGACATTATCGTTGATGCCGTCAAGATTGAGCAGG 16283
Query 42940 AGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCA 42999
||||||| || || | ||||| | || ||||||||||| | || | |||
Sbjct 16282 AGTTCCTAACCGAGGCTCTGCCTTGCGCTCTCCTCGGCATGAACTCCAACTTGATGAAGC 16223
Query 43000 AGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CGCC---- 43053
|||||||| ||| ||| ||||||| |||| | | | | ||| || || |
Sbjct 16222 AGTACATCGAGTTCGTTGCCGACCGTCTCTT------GGTTGCTCTTGGCAACGACAAGG 16169
Query 43054 TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCA 43113
||||||| | | |||||| ||||| |||||||||||||| | | ||||||||||
Sbjct 16168 TCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCA 16109
Query 43114 ACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
|||| || ||||||||||| ||||||||||||
Sbjct 16108 ACTTCTTTGAGAAGCGCGTTGCCGACTACCAG 16077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944306431429760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |