Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1932 435 6e-117 seq1058 269 5e-67 >seq1932 Length=74184 Score = 435 bits (482), Expect = 6e-117 Identities = 1060/1585 (67%), Gaps = 63/1585 (4%) Strand=Plus/Minus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGA- 243932 || ||||||||||||| |||||||| ||||| | || || || ||||| || | Sbjct 59886 GATGTTGAGGGACTGGGACTGGTCGATGAAGGCACCACGATCGGCAGCCATCTGGACAAC 59827 Query 243933 GGTCCT-TCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGG--GGA 243989 ||| | | ||||| || || ||| |||||||| | | ||||| ||||| ||| Sbjct 59826 GGTGCGCTGGGAGATTTCCCAGACG--GTCTTGTACAGAGCCTTGAC---CTCGGCGGGA 59772 Query 243990 ACCCTTCG-ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCG 244048 | | | |||||||| || || || || | | | |||| || | |||| |||| Sbjct 59771 ATGTTGGGGATGTTCTGAACGGAACCATTCTCGGCAATGATACGGTTCTTCATGGCATCG 59712 Query 244049 TTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCT 244108 ||| | ||||| | | || ||| | ||| ||| || ||||| ||||| Sbjct 59711 GACCATAAGCCCATGTCGACGAGATCCTTAAGCAGCCAGGGGTTGACAACCTGGAACTCG 59652 Query 244109 CCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTG 244168 || | || || ||||||||||||| |||| || ||||||| || ||| ||||| Sbjct 59651 CCGGCAAGAACACGGCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTG 59592 Query 244169 CCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACG 244228 |||| ||||| | ||| ||||| |||||||| | || ||||||||||| | || Sbjct 59591 CCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAACAAGCAGACTGTTGCGAACA 59532 Query 244229 CCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCC---AGTCCCACATGCCCGAGAGGTCC 244285 ||||| || ||| ||| ||| ||| ||||||| | || ||||||| Sbjct 59531 CCGTGTTCCTTGAT-------CTG--CTCCTTCAGAGAGTCCCA---GTCCCAGAGGTCA 59484 Query 244286 TCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCG 244345 | | |||| ||||||||| |||| || | |||| | || ||| ||||||| Sbjct 59483 GAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGGAGCCCTCG 59424 Query 244346 TAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTC-TCGTCGAGGGCGGCGTA 244404 || || | ||||| ||| || | |||||| | | | | | ||| || || |||| Sbjct 59423 TACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAACGGACATGGTC-AGAGCAGCGTG 59365 Query 244405 GTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT--GAAGGGG 244462 ||||||||||||||| ||| ||||||| | ||||| |||| | | || ||| || Sbjct 59364 GTAGATGGTCTCGAAAATCTTCTTGTTGAGATCGCGAGCCT--CAGGAGACTCGAAAGGC 59307 Query 244463 ATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGT 244522 |||| | | |||| | || || || ||||| || || | ||||||||| | ||| Sbjct 59306 ATGCGTAGGGCAAGGAAGGCATCAGCAAGACCCTGGACACCAAGGCCGATGGGACGGTGA 59247 Query 244523 CGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTG 244582 ||| ||||| | || || || |||||||| |||| | || || | |||||| Sbjct 59246 CGCATGTTGCTGTTGCGAGCCTCAGGAACGGGGTAGTGGTTGACATCAATGATCTTGTTC 59187 Query 244583 AGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGA 244642 ||||||||| | | | ||| ||| ||| ||| || ||||| | | Sbjct 59186 AGGTTGCGGACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAATCGTAGAC------A 59133 Query 244643 TCCTCGGCGATGGTGATCCTCACAAACTCGTTG--AGGGCGACGCTGGCCAGGTTGCAGA 244700 ||||| | | || | || || || | ||||| | ||||| |||||| | Sbjct 59132 CCCTCGTTG-TAGTCA-----ACGAAG--GTAGGCAGGGCAAGAGAGGCCAAGTTGCATA 59081 Query 244701 CGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGA 244760 | || ||||| || | | | ||||| | ||||| |||||||| || || || Sbjct 59080 CAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGATTGGAGCTGCGGA 59021 Query 244761 TGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGG 244820 |||| || |||| || || ||| |||| ||| |||||||||||| |||||||||| Sbjct 59020 TGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGTCCTTGTAAAGCATGAAGG 58961 Query 244821 GCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCG 244880 | |||||||| ||| || |||||| | || ||| || | | ||||||| | Sbjct 58960 GGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCTTCTGGGCCTTGATGG 58901 Query 244881 TCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCC 244940 || ||||| ||||||| || |||||| ||||| |||||||||||| ||| Sbjct 58900 TCTTGCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGT 58841 Query 244941 AGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCC 244999 || || | |||||||||||| || ||| |||||||| |||| ||| || | | Sbjct 58840 AGCAGTCAGCCAGGCCGGGGCACT-CGTTGGGACACATGAGGGTCCATTCGGCGTTCTTC 58782 Query 245000 TTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTC 245059 | ||| |||| |||||| || ||||||||||||||||| |||| ||||| | | | Sbjct 58781 TCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGTCACGAGCACGG 58722 Query 245060 TGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAG 245119 ||| ||| ||| |||||| | || |||| || |||||||| ||| ||||||| Sbjct 58721 ACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCAAAGACATCGGCGTGCCAA 58662 Query 245120 GGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTC 245179 ||||| | ||||| |||| ||| || || ||||||||||| |||||||| | | | Sbjct 58661 GGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGA----CGTA 58606 Query 245180 TCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGT 245235 ||||| |||||||| || || | || | | ||||||||| ||||||||| Sbjct 58605 GCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTAGAGGTGCCGTTGGT 58546 Query 245236 GCCCTTGATGTAGGCGCCCTTGCCCCTGA---GGTTGCTGATGGACATGCCTAGTCCGCC 245292 ||| || |||| ||| || | | || ||| | | || | || | || || Sbjct 58545 GCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTG---AGACCAATGCCACC 58489 Query 245293 GGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTC 245352 || ||||||||| | ||||||| |||||| |||||| || ||||| ||| ||| Sbjct 58488 AGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCAATGGAGTC 58429 Query 245353 CGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAA 245412 |||||||| || || ||||| || ||||||||| || ||| | | | |||||| Sbjct 58428 TTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACCGGCGTTGAA 58369 Query 245413 CAGAGTGGGGCTGGCGTGGGTAAAG 245437 || |||||| ||||||||| ||| Sbjct 58368 GAGTGTGGGGGAGGCGTGGGTGAAG 58344 >seq1058 Length=49244 Score = 269 bits (298), Expect = 5e-67 Identities = 373/512 (73%), Gaps = 25/512 (5%) Strand=Plus/Minus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAG 42703 |||||||| |||||||| | || |||||| || | | | | | | |||| | || | Sbjct 16574 AAGAAGGCTGACTGGGCCTTGAAGTGGATC-AGCGACGATAGCTCTTCCTTCGCCCAGCG 16516 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 |||||| ||||| |||| |||||||| ||||||||| || ||||||||||||||||| Sbjct 16515 GCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTT 16456 Query 42764 CTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 |||||||||| || ||| || |||||||| || |||||||| ||||| |||||| | Sbjct 16455 CTGGCTCAAGAAGCGTGGTCTC-ATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCC 16397 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882 | || ||||| || || | ||||||||||||||| ||| ||| ||||||| |||| Sbjct 16396 GTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCTTGTACTC---TCACCTCAAGCAC- 16341 Query 42883 AGCCCTCGAAGGAGCGGGTC---CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGG 42939 ||||| | | ||| |||| || ||| ||| || ||||| |||| ||| ||| Sbjct 16340 CGCCCTAGCA--AGCAGGTCATTGAGGACATTATCGTTGATGCCGTCAAGATTGAGCAGG 16283 Query 42940 AGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCA 42999 ||||||| || || | ||||| | || ||||||||||| | || | ||| Sbjct 16282 AGTTCCTAACCGAGGCTCTGCCTTGCGCTCTCCTCGGCATGAACTCCAACTTGATGAAGC 16223 Query 43000 AGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CGCC---- 43053 |||||||| ||| ||| ||||||| |||| | | | | ||| || || | Sbjct 16222 AGTACATCGAGTTCGTTGCCGACCGTCTCTT------GGTTGCTCTTGGCAACGACAAGG 16169 Query 43054 TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCA 43113 ||||||| | | |||||| ||||| |||||||||||||| | | |||||||||| Sbjct 16168 TCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCA 16109 Query 43114 ACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||| || ||||||||||| |||||||||||| Sbjct 16108 ACTTCTTTGAGAAGCGCGTTGCCGACTACCAG 16077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944306431429760