Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1058 93.3 9e-14 >seq1058 Length=49244 Score = 93.3 bits (102), Expect = 9e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 243530 AGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGG 243589 |||| ||| | ||| ||| | || ||| || | ||||||||||| | | ||| Sbjct 16285 AGGAGTTCCTAACCGAGGCTCTGCCTTGCGCTCTCCTCGGCATGAACTCCAACTTGATGA 16226 Query 243590 GACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGT 243649 ||||||||||| ||||| |||||||| | || | || ||||| | || || || | Sbjct 16225 AGCAGTACATCGAGTTCGTTGCCGACCGTCTCTTGGTTGCTCTTGGCAACGACAAGGTCT 16166 Query 243650 ACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACT 243709 |||| || |||||||||| ||| |||||| ||| || ||| || || || |||| Sbjct 16165 ACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACT 16106 Query 243710 TCTTCGAAAAGCGTGT 243725 |||| || ||||| || Sbjct 16105 TCTTTGAGAAGCGCGT 16090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102840773315600